Variant report

Variant	rs7780860
Chromosome Location	chr7:79871598-79871599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10275321	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13223147	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17153558	1.00[CEU][hapmap]
rs1858339	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4418288	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59982810	0.85[EUR][1000 genomes]
rs62462677	0.86[EUR][1000 genomes]
rs6980462	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1024312	chr7:79832637-80004812	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv1029180	chr7:79832637-80017560	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:79861400-79873800	Weak transcription	Osteobl	bone
2	chr7:79863000-79872600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:79870000-79873200	Weak transcription	Gastric	stomach
4	chr7:79870600-79879200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:79870800-79874000	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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