Variant report

Variant	rs7780901
Chromosome Location	chr7:137122576-137122577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1647185	1.00[AMR][1000 genomes]
rs1647192	1.00[AMR][1000 genomes]
rs1731908	1.00[AMR][1000 genomes]
rs1731909	1.00[AMR][1000 genomes]
rs1731911	1.00[AMR][1000 genomes]
rs1731963	1.00[AMR][1000 genomes]
rs1731978	1.00[AMR][1000 genomes]
rs7797474	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv869820	chr7:136990386-137347718	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1027868	chr7:137004690-137311653	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv539134	chr7:137004690-137311653	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137091400-137124600	Weak transcription	Aorta	Aorta
2	chr7:137108400-137124600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr7:137117000-137126600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr7:137120000-137124400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:137120200-137124400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:137120200-137124600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:137120200-137124800	Weak transcription	Fetal Heart	heart
8	chr7:137120400-137124400	Weak transcription	Brain Angular Gyrus	brain
9	chr7:137120400-137124400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:137120600-137124400	Weak transcription	Brain Anterior Caudate	brain
11	chr7:137120600-137124600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:137120600-137124600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:137120800-137124400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr7:137120800-137124400	Weak transcription	Brain Hippocampus Middle	brain
15	chr7:137120800-137124400	Weak transcription	Brain Substantia Nigra	brain
16	chr7:137120800-137124600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr7:137121400-137124800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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