Variant report

Variant	rs7780939
Chromosome Location	chr7:15619278-15619279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:15583030..15584744-chr7:15618985..15621103,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10486765	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1072215	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs10950572	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11980782	0.95[ASN][1000 genomes]
rs12532533	0.83[ASN][1000 genomes]
rs12699738	0.86[ASN][1000 genomes]
rs17330905	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17332316	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2189446	0.86[ASN][1000 genomes]
rs2189448	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2237494	0.84[ASN][1000 genomes]
rs28835422	0.87[ASN][1000 genomes]
rs34711109	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs3823870	0.81[ASN][1000 genomes]
rs4721450	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6942945	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6946099	0.85[ASN][1000 genomes]
rs73070236	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7788980	0.82[ASN][1000 genomes]
rs7795235	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7811936	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv606297	chr7:15582208-15621650	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv606298	chr7:15598156-15621650	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv606299	chr7:15603853-15637887	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15618200-15621200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:15619000-15620400	Enhancers	Liver	Liver

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