Variant report

Variant	rs7781646
Chromosome Location	chr7:16801006-16801007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16796604..16799522-chr7:16799940..16802682,3	MCF-7	breast:
2	chr7:16800951..16805401-chr7:16805504..16810552,5	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10233465	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs10238328	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1149519	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1149522	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1149524	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1149526	0.86[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12530923	0.85[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs12535558	0.90[ASN][1000 genomes]
rs13244013	0.95[ASN][1000 genomes]
rs1997114	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1997115	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2085706	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2290836	0.86[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs2290837	0.85[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs34614062	0.90[ASN][1000 genomes]
rs3779051	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3807490	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3807492	0.82[JPT][hapmap]
rs3807509	0.87[ASN][1000 genomes]
rs3823652	0.86[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4400279	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4721535	0.88[ASN][1000 genomes]
rs4721536	0.87[ASN][1000 genomes]
rs4721538	0.86[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs4721539	0.82[JPT][hapmap]
rs55802535	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62441050	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6461275	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6942785	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6951449	0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs6962578	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6975847	0.84[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6980298	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs706055	0.88[ASN][1000 genomes]
rs73299615	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7809197	0.89[ASN][1000 genomes]
rs818803	1.00[CEU][hapmap];0.91[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs818804	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028125	chr7:16529160-16847225	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv1024059	chr7:16639432-16836425	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16795000-16804200	Weak transcription	HUVEC	blood vessel
2	chr7:16795000-16806000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:16795000-16810200	Weak transcription	HMEC	breast
4	chr7:16795000-16810400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:16795000-16828400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:16795200-16810000	Weak transcription	NHEK	skin
7	chr7:16795200-16810600	Weak transcription	Fetal Muscle Leg	muscle
8	chr7:16795400-16813000	Weak transcription	Right Ventricle	heart
9	chr7:16796200-16801800	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:16796200-16804600	Weak transcription	Pancreas	Pancrea
11	chr7:16796200-16806400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr7:16796400-16810200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr7:16796600-16801800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:16796600-16803600	Weak transcription	Brain Anterior Caudate	brain
15	chr7:16796600-16804400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr7:16796600-16810400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr7:16796600-16816200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:16796800-16801800	Weak transcription	Fetal Heart	heart
19	chr7:16799000-16803200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr7:16799000-16807800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:16799000-16810400	Weak transcription	K562	blood
22	chr7:16799600-16802600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr7:16799600-16810000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr7:16799600-16813000	Weak transcription	Stomach Mucosa	stomach
25	chr7:16799800-16801800	Enhancers	Primary B cells from peripheral blood	blood
26	chr7:16799800-16801800	Weak transcription	Right Atrium	heart
27	chr7:16799800-16803000	Weak transcription	Gastric	stomach
28	chr7:16799800-16804600	Weak transcription	Left Ventricle	heart
29	chr7:16800200-16801200	Enhancers	Fetal Lung	lung
30	chr7:16800200-16801400	Enhancers	Fetal Intestine Small	intestine
31	chr7:16800200-16802800	Genic enhancers	Primary B cells from cord blood	blood
32	chr7:16800200-16803200	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr7:16800400-16801400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr7:16800400-16802800	Enhancers	Fetal Intestine Large	intestine
35	chr7:16800600-16825600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr7:16800800-16803000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:16801000-16802000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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