Variant report

Variant	rs7781749
Chromosome Location	chr7:18386594-18386595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10486304	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11769668	0.90[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs1178311	0.84[JPT][hapmap]
rs12539678	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13227027	0.90[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.83[AMR][1000 genomes]
rs13232015	0.90[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs16872006	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17138914	0.88[JPT][hapmap]
rs17139047	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17139048	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs17139056	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2859972	0.81[EUR][1000 genomes]
rs2892886	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs302162	0.89[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap]
rs302164	0.90[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs302165	0.86[AMR][1000 genomes]
rs302168	0.81[AMR][1000 genomes]
rs34685336	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3737280	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs55744175	0.83[AMR][1000 genomes]
rs56398383	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs623532	0.94[JPT][hapmap]
rs624811	0.90[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs647270	0.94[JPT][hapmap]
rs679492	0.94[JPT][hapmap]
rs680882	0.93[JPT][hapmap]
rs7457904	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1030201	chr7:17898410-18491985	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
4	nsv606358	chr7:18084843-18416097	Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv887810	chr7:18193589-18391557	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1029901	chr7:18205779-18387956	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv830916	chr7:18254299-18433349	Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv2755157	chr7:18337660-18805860	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18384800-18387400	Enhancers	Primary B cells from cord blood	blood
2	chr7:18384800-18395400	Weak transcription	Adipose Nuclei	Adipose
3	chr7:18385200-18386600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:18385200-18388800	Weak transcription	Fetal Heart	heart
5	chr7:18385600-18401600	Weak transcription	Aorta	Aorta
6	chr7:18386000-18386800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr7:18386200-18387600	Enhancers	Primary B cells from peripheral blood	blood
8	chr7:18386400-18386800	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr7:18386400-18387600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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