Variant report

Variant	rs7782100
Chromosome Location	chr7:80236938-80236939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80230076..80232841-chr7:80236237..80238542,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135218	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11574711	1.00[YRI][hapmap]
rs17154147	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80227400-80238200	Weak transcription	Small Intestine	intestine
2	chr7:80230200-80237000	Weak transcription	Gastric	stomach
3	chr7:80231800-80240200	Weak transcription	Fetal Muscle Leg	muscle
4	chr7:80234600-80240600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:80234800-80241600	Enhancers	Fetal Intestine Small	intestine
6	chr7:80235400-80237600	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr7:80235600-80239600	Enhancers	Fetal Intestine Large	intestine
8	chr7:80235800-80237000	Enhancers	HepG2	liver
9	chr7:80235800-80237200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr7:80235800-80239400	Enhancers	Fetal Lung	lung
11	chr7:80236000-80239800	Enhancers	Duodenum Mucosa	Duodenum
12	chr7:80236000-80240400	Weak transcription	Fetal Stomach	stomach
13	chr7:80236200-80237000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:80236200-80237000	Weak transcription	Pancreas	Pancrea
15	chr7:80236200-80238600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr7:80236200-80240400	Weak transcription	Psoas Muscle	Psoas
17	chr7:80236400-80237000	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr7:80236400-80237600	Weak transcription	Fetal Heart	heart
19	chr7:80236400-80238600	Weak transcription	Right Atrium	heart
20	chr7:80236400-80238800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr7:80236600-80237000	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr7:80236800-80237000	Enhancers	Stomach Mucosa	stomach
23	chr7:80236800-80237400	Enhancers	Left Ventricle	heart
24	chr7:80236800-80237400	Enhancers	Rectal Mucosa Donor 31	rectum
25	chr7:80236800-80237400	Enhancers	Right Ventricle	heart
26	chr7:80236800-80241200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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