Variant report

Variant	rs7782626
Chromosome Location	chr7:147608727-147608728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10227044	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10232117	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10242501	0.85[AFR][1000 genomes]
rs10244466	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10259139	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10264316	0.85[YRI][hapmap]
rs10265762	1.00[YRI][hapmap]
rs10267612	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10270081	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs10280385	0.85[YRI][hapmap]
rs10480380	0.85[YRI][hapmap]
rs10480384	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7786561	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7806845	1.00[AMR][1000 genomes]
rs7806850	1.00[AMR][1000 genomes]
rs7810021	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023913	chr7:147521075-147806318	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1026058	chr7:147521109-147783042	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv539179	chr7:147521109-147783042	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv934002	chr7:147521110-147807705	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017610	chr7:147523752-147806427	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:147601200-147609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:147606600-147610200	Enhancers	Adipose Nuclei	Adipose
3	chr7:147607000-147609200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:147607000-147612400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr7:147607200-147612200	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:147607200-147612600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr7:147608000-147609000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr7:147608200-147608800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr7:147608200-147608800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr7:147608200-147609200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr7:147608200-147609800	Enhancers	Primary hematopoietic stem cells	blood
12	chr7:147608200-147609800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:147608200-147609800	Enhancers	Fetal Lung	lung
14	chr7:147608200-147610000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr7:147608200-147610000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr7:147608200-147610000	Enhancers	Brain Substantia Nigra	brain
17	chr7:147608400-147609600	Enhancers	Psoas Muscle	Psoas
18	chr7:147608600-147609000	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:147608600-147609000	Weak transcription	Fetal Muscle Leg	muscle
20	chr7:147608600-147612200	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr7:147608600-147612400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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