Variant report

Variant	rs7782650
Chromosome Location	chr7:150869437-150869438
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:150869346-150870302	MCF-7	breast:	n/a	chr7:150869839-150869860 chr7:150869777-150869798 chr7:150869846-150869859 chr7:150869845-150869861 chr7:150869785-150869795 chr7:150869782-150869800 chr7:150869783-150869799 chr7:150869784-150869797 chr7:150869844-150869862 chr7:150869847-150869857 chr7:150869788-150869797
2	CTCF	chr7:150869324-150870407	HCT-116	colon:	n/a	chr7:150869839-150869860 chr7:150869777-150869798 chr7:150869846-150869859 chr7:150869845-150869861 chr7:150869785-150869795 chr7:150869782-150869800 chr7:150869783-150869799 chr7:150869784-150869797 chr7:150869844-150869862 chr7:150869847-150869857 chr7:150869788-150869797
3	RAD21	chr7:150869374-150870248	HCT-116	colon:	n/a	chr7:150869784-150869794 chr7:150869783-150869796 chr7:150869780-150869799 chr7:150869844-150869856 chr7:150869782-150869794 chr7:150869786-150869795 chr7:150869842-150869861 chr7:150869773-150869786 chr7:150869784-150869798 chr7:150869846-150869856
4	NR2F2	chr7:150869429-150870027	K562	blood:	n/a	n/a
5	HCFC1	chr7:150869330-150870196	Hela-S3	cervix:	n/a	n/a
6	CTCF	chr7:150869384-150870222	K562	blood:	n/a	chr7:150869839-150869860 chr7:150869777-150869798 chr7:150869846-150869859 chr7:150869845-150869861 chr7:150869785-150869795 chr7:150869782-150869800 chr7:150869783-150869799 chr7:150869784-150869797 chr7:150869844-150869862 chr7:150869847-150869857 chr7:150869788-150869797
7	CTCF	chr7:150869356-150870252	K562	blood:	n/a	chr7:150869839-150869860 chr7:150869777-150869798 chr7:150869846-150869859 chr7:150869845-150869861 chr7:150869785-150869795 chr7:150869782-150869800 chr7:150869783-150869799 chr7:150869784-150869797 chr7:150869844-150869862 chr7:150869847-150869857 chr7:150869788-150869797
8	SMC3	chr7:150869275-150870884	SK-N-SH	brain:	n/a	chr7:150869784-150869798 chr7:150869846-150869856 chr7:150870758-150870766 chr7:150869846-150869860 chr7:150869791-150869798
9	CTCF	chr7:150869121-150870413	A549	lung:	n/a	chr7:150869839-150869860 chr7:150869777-150869798 chr7:150869846-150869859 chr7:150869845-150869861 chr7:150869785-150869795 chr7:150869782-150869800 chr7:150869783-150869799 chr7:150869784-150869797 chr7:150869844-150869862 chr7:150869847-150869857 chr7:150869788-150869797
10	CTCF	chr7:150869211-150870715	HCT-116	colon:	n/a	chr7:150869839-150869860 chr7:150869777-150869798 chr7:150869846-150869859 chr7:150869845-150869861 chr7:150869785-150869795 chr7:150869782-150869800 chr7:150869783-150869799 chr7:150869784-150869797 chr7:150869844-150869862 chr7:150869847-150869857 chr7:150869788-150869797
11	RAD21	chr7:150869361-150870129	HCT-116	colon:	n/a	chr7:150869784-150869794 chr7:150869783-150869796 chr7:150869780-150869799 chr7:150869844-150869856 chr7:150869782-150869794 chr7:150869786-150869795 chr7:150869842-150869861 chr7:150869773-150869786 chr7:150869784-150869798 chr7:150869846-150869856
12	RAD21	chr7:150869227-150870169	SK-N-SH	brain:	n/a	chr7:150869784-150869794 chr7:150869783-150869796 chr7:150869780-150869799 chr7:150869844-150869856 chr7:150869782-150869794 chr7:150869786-150869795 chr7:150869842-150869861 chr7:150869773-150869786 chr7:150869784-150869798 chr7:150869846-150869856
13	CTCF	chr7:150869196-150871380	SK-N-SH	brain:	n/a	chr7:150869839-150869860 chr7:150869777-150869798 chr7:150869846-150869859 chr7:150869845-150869861 chr7:150869785-150869795 chr7:150869782-150869800 chr7:150869783-150869799 chr7:150869784-150869797 chr7:150869844-150869862 chr7:150869847-150869857 chr7:150869788-150869797
14	TEAD4	chr7:150869349-150870052	K562	blood:	n/a	n/a
15	SETDB1	chr7:150869363-150870105	U2OS	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr7:150659474..150661076-chr7:150869323..150870357,10	MCF-7	breast:
2	chr7:150475667..150476488-chr7:150869279..150870505,6	K562	blood:
3	chr7:150868708..150870235-chr7:150880029..150882715,2	K562	blood:
4	chr7:150869400..150870347-chr7:150941097..150942121,7	K562	blood:
5	chr7:150788232..150789119-chr7:150869345..150870245,2	K562	blood:
6	chr7:150869387..150869889-chr7:150888671..150889211,2	K562	blood:
7	chr7:150868839..150872466-chr7:150882758..150884932,3	K562	blood:
8	chr7:150820727..150822566-chr7:150869328..150870314,21	MCF-7	breast:
9	chr7:150819273..150820409-chr7:150869428..150870253,7	MCF-7	breast:
10	chr7:150572964..150574021-chr7:150869365..150870354,3	MCF-7	breast:
11	chr7:150820657..150823052-chr7:150869308..150870350,29	K562	blood:
12	chr7:150860030..150860932-chr7:150869274..150870067,3	K562	blood:
13	chr7:150807868..150808384-chr7:150869377..150870234,2	K562	blood:
14	chr7:150595645..150596235-chr7:150869234..150870141,2	MCF-7	breast:
15	chr7:150868213..150870135-chr7:150902617..150904463,2	MCF-7	breast:
16	chr7:150837331..150838153-chr7:150869329..150870043,2	MCF-7	breast:
17	chr7:150813337..150816221-chr7:150868567..150872033,3	K562	blood:
18	chr7:150866879..150869732-chr7:150922640..150924927,2	MCF-7	breast:
19	chr20:52720035..52720571-chr7:150869357..150869939,2	MCF-7	breast:
20	chr7:150869382..150869909-chr7:151012274..151012812,2	K562	blood:
21	chr7:150864670..150867629-chr7:150867737..150869840,2	MCF-7	breast:
22	chr7:150866583..150869768-chr7:150922460..150926125,3	K562	blood:
23	chr7:150820513..150821925-chr7:150868429..150870728,74	MCF-7	breast:
24	chr7:150521503..150522014-chr7:150869321..150870223,2	K562	blood:
25	chr7:150867962..150869768-chr7:150923937..150926125,2	K562	blood:
26	chr7:150819307..150820060-chr7:150869417..150870164,3	MCF-7	breast:
27	chr7:150856964..150857632-chr7:150869406..150870241,2	K562	blood:
28	chr7:150573002..150574576-chr7:150869374..150870431,9	K562	blood:
29	chr7:150659654..150660671-chr7:150869377..150870320,4	K562	blood:
30	chr7:150823122..150823820-chr7:150869370..150869890,2	K562	blood:
31	chr7:150858619..150859178-chr7:150869378..150869898,2	K562	blood:
32	chr7:150869379..150870234-chr7:150941055..150942048,8	MCF-7	breast:
33	chr7:150865510..150867888-chr7:150868111..150870105,3	MCF-7	breast:
34	chr7:150821997..150823437-chr7:150869432..150870307,6	MCF-7	breast:
35	chr7:150869179..150870329-chr7:151000054..151001183,7	K562	blood:
36	chr7:150814963..150815531-chr7:150869365..150870179,2	MCF-7	breast:

Variant related genes	Relation type
GBX1	TF binding region
ENSG00000002726	Chromatin interaction
ENSG00000146926	Chromatin interaction
ENSG00000133612	Chromatin interaction
ENSG00000033050	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10246655	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1991627	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34765595	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4726005	0.84[CEU][hapmap];0.89[YRI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs767866	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
4	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv609034	chr7:150830015-150893629	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150865400-150870400	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr7:150865600-150869800	Weak transcription	Pancreas	Pancrea
3	chr7:150865600-150877800	Weak transcription	Right Atrium	heart
4	chr7:150868400-150869800	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr7:150868400-150870200	Enhancers	Fetal Heart	heart
6	chr7:150868600-150877800	Weak transcription	Left Ventricle	heart
7	chr7:150869400-150869800	Bivalent Enhancer	A549	lung
8	chr7:150869400-150870400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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