Variant report

Variant	rs7782939
Chromosome Location	chr7:16460893-16460894
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:16153945..16154474-chr7:16460404..16460914,2	MCF-7	breast:
2	chr7:16460189..16463814-chr7:16683756..16686111,3	MCF-7	breast:
3	chr7:16460318..16462710-chr7:16792580..16794734,3	K562	blood:
4	chr7:16456001..16461931-chr7:16682283..16687700,6	K562	blood:
5	chr7:16302978..16309646-chr7:16456908..16462647,13	K562	blood:
6	chr7:16459816..16461703-chr7:16684865..16686576,2	MCF-7	breast:
7	chr7:16307891..16309646-chr7:16460887..16462647,2	K562	blood:
8	chr13:52026790..52027660-chr7:16460336..16460956,2	HCT-116	colon:

No data

Variant related genes	Relation type
ENSG00000236778	Chromatin interaction
ENSG00000106537	Chromatin interaction
ENSG00000106524	Chromatin interaction
ENSG00000136261	Chromatin interaction
ENSG00000229688	Chromatin interaction
ENSG00000102786	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10257504	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10464287	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10950619	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11976934	0.85[EUR][1000 genomes]
rs17617900	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17680292	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28512480	0.87[EUR][1000 genomes]
rs56206818	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56223703	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56335840	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60989361	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6461255	0.90[EUR][1000 genomes]
rs66743577	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6947550	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6948660	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6949112	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6955398	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6958802	0.87[EUR][1000 genomes]
rs7457079	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9655136	0.87[EUR][1000 genomes]
rs9691296	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv1034151	chr7:16415497-16578081	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16459400-16461400	Active TSS	K562	blood
2	chr7:16459600-16461400	Active TSS	Brain Anterior Caudate	brain
3	chr7:16459600-16461400	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr7:16459600-16461600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr7:16459600-16461600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:16459600-16461600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:16459600-16461600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:16459600-16461600	Flanking Active TSS	HMEC	breast
9	chr7:16459600-16461800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
10	chr7:16459600-16462000	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr7:16459800-16461200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr7:16459800-16461200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:16459800-16461200	Active TSS	Right Atrium	heart
14	chr7:16459800-16461400	Active TSS	H9 Cell Line	embryonic stem cell
15	chr7:16459800-16461400	Flanking Active TSS	Primary B cells from cord blood	blood
16	chr7:16459800-16461400	Active TSS	Brain Angular Gyrus	brain
17	chr7:16459800-16461400	Active TSS	Left Ventricle	heart
18	chr7:16459800-16461400	Active TSS	A549	lung
19	chr7:16459800-16461600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
20	chr7:16459800-16461600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr7:16459800-16461600	Flanking Active TSS	Primary hematopoietic stem cells	blood
22	chr7:16459800-16461800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
23	chr7:16459800-16461800	Active TSS	Right Ventricle	heart
24	chr7:16460000-16461200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr7:16460000-16461200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr7:16460000-16461200	Active TSS	Breast Myoepithelial Primary Cells	Breast
27	chr7:16460000-16461200	Active TSS	Fetal Intestine Large	intestine
28	chr7:16460000-16461200	Active TSS	Pancreas	Pancrea
29	chr7:16460000-16461200	Active TSS	Stomach Mucosa	stomach
30	chr7:16460000-16461400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
31	chr7:16460000-16461400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:16460000-16461400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr7:16460000-16461400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
34	chr7:16460000-16461400	Active TSS	Aorta	Aorta
35	chr7:16460000-16461400	Active TSS	Placenta Amnion	Placenta Amnion
36	chr7:16460000-16461400	Active TSS	Psoas Muscle	Psoas
37	chr7:16460000-16461400	Active TSS	Small Intestine	intestine
38	chr7:16460000-16461600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr7:16460000-16461600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:16460000-16461600	Active TSS	Fetal Muscle Trunk	muscle
41	chr7:16460000-16461600	Active TSS	Ovary	ovary
42	chr7:16460000-16461600	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr7:16460200-16461000	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr7:16460200-16461000	Active TSS	Adipose Nuclei	Adipose
45	chr7:16460200-16461000	Active TSS	NHLF	lung
46	chr7:16460200-16461200	Active TSS	HUES48 Cell Line	embryonic stem cell
47	chr7:16460200-16461200	Active TSS	HUES6 Cell Line	embryonic stem cell
48	chr7:16460200-16461200	Active TSS	iPS-18 Cell Line	embryonic stem cell
49	chr7:16460200-16461200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:16460200-16461200	Active TSS	Primary T helper cells PMA-I stimulated	--

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