Variant report

Variant	rs7783171
Chromosome Location	chr7:18828796-18828797
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10266741	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs10280633	0.87[JPT][hapmap]
rs10950703	0.80[ASN][1000 genomes]
rs10950704	0.95[CEU][hapmap];0.81[JPT][hapmap]
rs12535294	0.95[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12540224	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12540265	0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs12540872	0.87[JPT][hapmap]
rs12699981	0.87[JPT][hapmap]
rs13243526	0.82[ASN][1000 genomes]
rs17349342	0.93[CHB][hapmap];0.92[JPT][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs1989817	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2028012	0.86[JPT][hapmap]
rs2028016	0.87[JPT][hapmap]
rs2073962	0.82[JPT][hapmap]
rs2078866	0.86[JPT][hapmap];0.83[ASN][1000 genomes]
rs2078869	0.94[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2157901	0.87[JPT][hapmap]
rs2519746	0.95[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2520345	0.82[JPT][hapmap]
rs2520360	0.82[JPT][hapmap]
rs2588597	0.95[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2588599	0.87[JPT][hapmap]
rs2588600	0.82[JPT][hapmap]
rs2588603	0.81[JPT][hapmap]
rs2588604	0.82[JPT][hapmap]
rs2588605	0.82[JPT][hapmap]
rs2588623	0.82[JPT][hapmap]
rs2588625	0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs2588627	0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs3852250	0.81[ASN][1000 genomes]
rs3854289	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3854290	0.81[ASN][1000 genomes]
rs3855596	0.83[ASN][1000 genomes]
rs3901892	0.95[CEU][hapmap];0.88[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6461384	0.95[CEU][hapmap];0.87[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6951973	0.81[JPT][hapmap]
rs6963568	0.95[CEU][hapmap];0.87[JPT][hapmap]
rs6972607	0.87[JPT][hapmap]
rs7776786	0.80[CHB][hapmap];0.86[JPT][hapmap]
rs7779024	0.82[JPT][hapmap]
rs7782894	0.83[ASN][1000 genomes]
rs7783209	0.83[ASN][1000 genomes]
rs7798677	0.87[JPT][hapmap]
rs7801849	0.83[ASN][1000 genomes]
rs929196	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531368	chr7:18677922-18836920	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv498112	chr7:18677922-18991946	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv887813	chr7:18720135-18995552	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv887814	chr7:18751998-18886177	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:18790600-18835000	Weak transcription	Primary B cells from cord blood	blood
2	chr7:18818600-18832200	Weak transcription	Osteobl	bone
3	chr7:18818800-18832400	Weak transcription	HSMMtube	muscle
4	chr7:18827800-18832400	Weak transcription	Adipose Nuclei	Adipose
5	chr7:18828000-18832400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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