Variant report

Variant	rs7783228
Chromosome Location	chr7:138581576-138581577
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:138579218..138582183-chr7:138663674..138666360,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122778	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10270572	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6467816	0.95[ASN][1000 genomes]
rs7792926	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831154	chr7:138470488-138674113	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1027143	chr7:138480084-138992900	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv539136	chr7:138480084-138992900	Weak transcription Genic enhancers Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	esv1801348	chr7:138571311-138581979	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:138534600-138592400	Weak transcription	Brain Angular Gyrus	brain
2	chr7:138536800-138583000	Weak transcription	HUVEC	blood vessel
3	chr7:138545400-138597200	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:138549200-138596800	Weak transcription	Aorta	Aorta
5	chr7:138553000-138592200	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr7:138554200-138581600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:138561400-138583000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr7:138562000-138598000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:138562000-138598200	Weak transcription	HMEC	breast
10	chr7:138566000-138583600	Weak transcription	Lung	lung
11	chr7:138566200-138588200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:138566200-138606400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:138566400-138609800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:138566600-138592000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr7:138570600-138592600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr7:138571200-138592600	Weak transcription	Brain Anterior Caudate	brain
17	chr7:138571600-138583200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:138571600-138592000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:138572000-138586600	Weak transcription	Dnd41	blood
20	chr7:138573400-138596800	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr7:138573600-138601000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr7:138573800-138606600	Weak transcription	Gastric	stomach
23	chr7:138574200-138582600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:138574600-138604400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:138574800-138582000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:138575600-138597600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr7:138575600-138602200	Weak transcription	Fetal Intestine Large	intestine
28	chr7:138576000-138584200	Strong transcription	Brain Germinal Matrix	brain
29	chr7:138576000-138584800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr7:138576000-138592200	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr7:138576000-138594800	Strong transcription	Fetal Brain Female	brain
32	chr7:138576000-138596600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:138576000-138601400	Weak transcription	Duodenum Mucosa	Duodenum
34	chr7:138576200-138601800	Weak transcription	Right Ventricle	heart
35	chr7:138576200-138602000	Weak transcription	Left Ventricle	heart
36	chr7:138576200-138603600	Weak transcription	NH-A	brain
37	chr7:138576400-138583000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:138576400-138610600	Weak transcription	Liver	Liver
39	chr7:138576600-138582200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr7:138576600-138583000	Weak transcription	Fetal Thymus	thymus
41	chr7:138576600-138583800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:138576600-138586600	Weak transcription	Adipose Nuclei	Adipose
43	chr7:138576600-138588200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:138576600-138591600	Weak transcription	Ovary	ovary
45	chr7:138576600-138603800	Weak transcription	Osteobl	bone
46	chr7:138576800-138593800	Weak transcription	Fetal Heart	heart
47	chr7:138576800-138601800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr7:138577000-138588000	Weak transcription	Placenta	Placenta
49	chr7:138577000-138598400	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr7:138577000-138601200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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