Variant report

Variant	rs77832494
Chromosome Location	chr11:17457346-17457347
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KCNJ11-3	chr11:17457219-17457728	NONHSAT018235

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469895	chr11:17368270-17584220	Weak transcription Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv982989	chr11:17456773-17457868	Weak transcription Enhancers Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17435200-17460600	Weak transcription	Right Atrium	heart
2	chr11:17443600-17458000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:17443800-17462600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:17446400-17460600	Weak transcription	Fetal Intestine Small	intestine
5	chr11:17450200-17457800	Enhancers	Fetal Muscle Leg	muscle
6	chr11:17451800-17458800	Weak transcription	Fetal Thymus	thymus
7	chr11:17452600-17457600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:17452800-17459000	Weak transcription	Lung	lung
9	chr11:17453000-17460200	Weak transcription	Gastric	stomach
10	chr11:17454000-17464000	Weak transcription	Brain Anterior Caudate	brain
11	chr11:17454200-17458800	Weak transcription	Dnd41	blood
12	chr11:17454200-17465800	Weak transcription	Brain Angular Gyrus	brain
13	chr11:17455600-17457800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr11:17456000-17457800	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr11:17456000-17469200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr11:17456200-17460200	Weak transcription	Fetal Brain Female	brain
17	chr11:17456200-17461000	Weak transcription	Spleen	Spleen
18	chr11:17456600-17457400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:17456600-17457800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr11:17456600-17460400	Weak transcription	Fetal Lung	lung
21	chr11:17457000-17457400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:17457000-17467200	Weak transcription	Fetal Brain Male	brain
23	chr11:17457200-17457400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:17457200-17459200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:17457200-17465400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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