Variant report

Variant	rs7783283
Chromosome Location	chr7:16410037-16410038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:16404670..16406505-chr7:16408648..16410407,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10232515	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10240752	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs10253784	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10259225	0.83[EUR][1000 genomes]
rs10267886	0.93[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs10272029	0.96[CEU][hapmap];0.87[CHB][hapmap];0.83[EUR][1000 genomes]
rs10950618	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13234570	0.93[ASN][1000 genomes]
rs17169465	0.96[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2178597	0.81[EUR][1000 genomes]
rs2389634	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2389635	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36199445	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3903222	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4351322	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60155393	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6461248	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6461250	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6461251	0.85[EUR][1000 genomes]
rs6461252	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6461254	0.96[CEU][hapmap];0.88[CHB][hapmap];0.84[EUR][1000 genomes]
rs6944820	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6949292	0.96[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6949353	0.95[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6966496	0.96[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6976548	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7782304	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7810822	0.83[EUR][1000 genomes]
rs7811104	0.81[EUR][1000 genomes]
rs9655136	0.92[CEU][hapmap];0.91[CHB][hapmap]
rs9886352	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv2759514	chr7:16236162-16527390	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1022388	chr7:16251992-16431864	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv2758105	chr7:16272822-16527390	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv2757215	chr7:16346139-16458474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv34392	chr7:16351845-16412625	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv508447	chr7:16360614-16446053	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1031019	chr7:16377519-16458474	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv1028556	chr7:16404615-16440024	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16396000-16416000	Weak transcription	HSMMtube	muscle
2	chr7:16398000-16415400	Weak transcription	Left Ventricle	heart
3	chr7:16398000-16417400	Weak transcription	Gastric	stomach
4	chr7:16402200-16416000	Weak transcription	Liver	Liver
5	chr7:16403600-16415200	Weak transcription	Psoas Muscle	Psoas
6	chr7:16405000-16417400	Weak transcription	Right Ventricle	heart
7	chr7:16406000-16413600	Weak transcription	K562	blood
8	chr7:16407000-16414600	Weak transcription	Fetal Lung	lung
9	chr7:16409400-16410400	ZNF genes & repeats	Fetal Muscle Leg	muscle
10	chr7:16409400-16410800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr7:16409400-16411000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:16409400-16412600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
13	chr7:16409600-16410200	Strong transcription	Stomach Smooth Muscle	stomach
14	chr7:16409600-16410600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr7:16409600-16410800	ZNF genes & repeats	Fetal Stomach	stomach
16	chr7:16409600-16410800	ZNF genes & repeats	Ovary	ovary
17	chr7:16409800-16410400	ZNF genes & repeats	Fetal Muscle Trunk	muscle
18	chr7:16409800-16410600	ZNF genes & repeats	Adipose Nuclei	Adipose
19	chr7:16409800-16410600	ZNF genes & repeats	Esophagus	oesophagus
20	chr7:16409800-16410600	ZNF genes & repeats	Pancreas	Pancrea
21	chr7:16409800-16410800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:16409800-16410800	ZNF genes & repeats	Aorta	Aorta
23	chr7:16410000-16414200	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr7:16410000-16414400	Weak transcription	Duodenum Smooth Muscle	Duodenum

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