Variant report

Variant	rs7783560
Chromosome Location	chr7:127756545-127756546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:127745939..127747505-chr7:127754984..127756729,2	K562	blood:
2	chr7:127755171..127759390-chr7:127760267..127762582,4	K562	blood:
3	chr7:127749559..127751658-chr7:127755944..127759580,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10487503	1.00[EUR][1000 genomes]
rs1468702	1.00[EUR][1000 genomes]
rs17133046	1.00[EUR][1000 genomes]
rs17151515	1.00[EUR][1000 genomes]
rs17151567	1.00[EUR][1000 genomes]
rs17151575	1.00[EUR][1000 genomes]
rs17151629	1.00[EUR][1000 genomes]
rs17151650	1.00[EUR][1000 genomes]
rs17151837	1.00[EUR][1000 genomes]
rs4728082	1.00[EUR][1000 genomes]
rs4731390	1.00[EUR][1000 genomes]
rs4731391	1.00[EUR][1000 genomes]
rs58395975	1.00[EUR][1000 genomes]
rs61743021	1.00[EUR][1000 genomes]
rs6467154	1.00[EUR][1000 genomes]
rs6946590	1.00[EUR][1000 genomes]
rs6952123	1.00[EUR][1000 genomes]
rs6952734	1.00[EUR][1000 genomes]
rs6953530	1.00[EUR][1000 genomes]
rs6964714	1.00[EUR][1000 genomes]
rs6975274	1.00[EUR][1000 genomes]
rs6976145	1.00[EUR][1000 genomes]
rs73721253	1.00[EUR][1000 genomes]
rs73721258	1.00[EUR][1000 genomes]
rs73721261	1.00[EUR][1000 genomes]
rs73721264	1.00[EUR][1000 genomes]
rs7791000	1.00[EUR][1000 genomes]
rs7794303	1.00[EUR][1000 genomes]
rs7794328	1.00[EUR][1000 genomes]
rs7804310	1.00[YRI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022385	chr7:127246656-127971194	Weak transcription Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv539120	chr7:127246656-127971194	Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:127744600-127761600	Weak transcription	Right Atrium	heart
2	chr7:127753400-127757200	Weak transcription	Primary B cells from cord blood	blood
3	chr7:127753400-127757400	Weak transcription	Fetal Thymus	thymus
4	chr7:127753400-127762000	Weak transcription	Fetal Brain Female	brain
5	chr7:127753800-127757200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:127754600-127756800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:127755000-127757200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr7:127755200-127756600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:127755200-127756600	Enhancers	HMEC	breast
10	chr7:127755200-127757200	Enhancers	Placenta	Placenta
11	chr7:127755400-127756600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:127755400-127756800	Enhancers	Placenta Amnion	Placenta Amnion
13	chr7:127755600-127758000	Enhancers	Spleen	Spleen
14	chr7:127755800-127756800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr7:127756000-127756600	Enhancers	NHEK	skin
16	chr7:127756000-127756800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
17	chr7:127756000-127759000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr7:127756000-127761400	Weak transcription	Osteobl	bone
19	chr7:127756000-127762000	Weak transcription	HSMM	muscle
20	chr7:127756200-127756800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
21	chr7:127756200-127757000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
22	chr7:127756200-127758800	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr7:127756200-127761800	Weak transcription	Esophagus	oesophagus
24	chr7:127756400-127757000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
25	chr7:127756400-127757200	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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