Variant report

Variant	rs77841729
Chromosome Location	chr6:11536945-11536946
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr6:11535699-11537243	HL-60	blood:	n/a	n/a
2	MAZ	chr6:11536838-11537184	GM12878	blood:	n/a	n/a
3	MXI1	chr6:11536790-11540132	SK-N-SH	brain:	n/a	n/a
4	MTA3	chr6:11536884-11538309	GM12878	blood:	n/a	n/a
5	MAFF	chr6:11536937-11536978	K562	blood:	n/a	n/a
6	REST	chr6:11536942-11538019	PFSK-1	brain:	n/a	chr6:11537853-11537863 chr6:11537525-11537538 chr6:11537576-11537589 chr6:11537558-11537571
7	REST	chr6:11535759-11537343	ECC-1	luminal epithelium:	n/a	n/a
8	MYC	chr6:11536907-11537079	NB4	blood:	n/a	n/a
9	TCF7L2	chr6:11536444-11537290	HEK293	kidney:	n/a	n/a
10	RFX5	chr6:11536074-11538333	SK-N-SH	brain:	n/a	n/a
11	ARID3A	chr6:11536592-11537409	HepG2	liver:	n/a	n/a
12	REST	chr6:11536937-11537263	HepG2	liver:	n/a	n/a
13	FOXA1	chr6:11536573-11537003	HepG2	liver:	n/a	chr6:11536712-11536724
14	RCOR1	chr6:11535607-11538534	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
TMEM170B	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv600989	chr6:11509323-11581990	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3323084	chr6:11535666-11540364	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11527000-11537000	Weak transcription	Placenta	Placenta
2	chr6:11527400-11537200	Weak transcription	Gastric	stomach
3	chr6:11531800-11537400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:11533000-11537000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:11534600-11537000	Enhancers	Liver	Liver
6	chr6:11535400-11537000	Enhancers	HUVEC	blood vessel
7	chr6:11535600-11537000	Enhancers	Hela-S3	cervix
8	chr6:11535800-11537000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:11536000-11537000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:11536000-11537000	Enhancers	Adipose Nuclei	Adipose
11	chr6:11536000-11537000	Enhancers	Brain Anterior Caudate	brain
12	chr6:11536000-11537000	Weak transcription	NH-A	brain
13	chr6:11536000-11537400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr6:11536200-11537000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:11536200-11537000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr6:11536200-11537000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr6:11536200-11537000	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:11536200-11537000	Enhancers	Rectal Smooth Muscle	rectum
19	chr6:11536200-11537000	Weak transcription	Small Intestine	intestine
20	chr6:11536400-11540400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:11536600-11537000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
22	chr6:11536600-11537000	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr6:11536600-11537000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:11536600-11537000	Enhancers	Fetal Intestine Large	intestine
25	chr6:11536600-11537000	Weak transcription	HMEC	breast
26	chr6:11536600-11537400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr6:11536800-11537000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
28	chr6:11536800-11537000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
29	chr6:11536800-11537000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:11536800-11537000	Enhancers	Primary B cells from peripheral blood	blood
31	chr6:11536800-11537000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
32	chr6:11536800-11537000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr6:11536800-11537000	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr6:11536800-11537000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr6:11536800-11537000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr6:11536800-11537000	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr6:11536800-11537000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:11536800-11537000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:11536800-11537000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:11536800-11537000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
41	chr6:11536800-11537000	Weak transcription	Brain Hippocampus Middle	brain
42	chr6:11536800-11537000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr6:11536800-11537000	Enhancers	Fetal Brain Female	brain
44	chr6:11536800-11537000	Enhancers	Fetal Heart	heart
45	chr6:11536800-11537000	Enhancers	Fetal Muscle Trunk	muscle
46	chr6:11536800-11537000	Enhancers	Fetal Muscle Leg	muscle
47	chr6:11536800-11537000	Enhancers	Fetal Stomach	stomach
48	chr6:11536800-11537000	Enhancers	Fetal Thymus	thymus
49	chr6:11536800-11537000	Active TSS	Rectal Mucosa Donor 29	rectum
50	chr6:11536800-11537000	Active TSS	HepG2	liver

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