Variant report

Variant	rs7784564
Chromosome Location	chr7:128076434-128076435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr7:128076371-128076582	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128075023..128077569-chr7:128095918..128098804,2	K562	blood:
2	chr7:128048480..128050287-chr7:128075489..128078227,2	MCF-7	breast:
3	chr7:128066083..128070069-chr7:128074107..128077404,7	MCF-7	breast:
4	chr7:128066135..128077193-chr7:128094256..128102719,54	MCF-7	breast:
5	chr7:128071934..128079559-chr7:128081793..128086197,10	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000228700	TF binding region
ENSG00000273184	Chromatin interaction
ENSG00000106348	Chromatin interaction
ENSG00000135245	Chromatin interaction
ENSG00000240758	Chromatin interaction
ENSG00000238590	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10228542	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10239919	0.82[EUR][1000 genomes]
rs12111997	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1560215	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17152065	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28391244	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28429588	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6978246	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7784120	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7806193	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv1801356	chr7:128073366-128084133	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128051400-128086200	Weak transcription	Right Atrium	heart
2	chr7:128071800-128078600	Weak transcription	Adipose Nuclei	Adipose
3	chr7:128073800-128083800	Weak transcription	Esophagus	oesophagus
4	chr7:128075000-128076600	Enhancers	Fetal Lung	lung
5	chr7:128075600-128083600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:128075600-128093800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:128075600-128093800	Weak transcription	Pancreas	Pancrea
8	chr7:128076000-128084000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr7:128076200-128080600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:128076200-128081800	Weak transcription	HepG2	liver
11	chr7:128076400-128076800	Enhancers	A549	lung
12	chr7:128076400-128079600	Enhancers	Primary B cells from peripheral blood	blood
13	chr7:128076400-128083400	Weak transcription	Placenta	Placenta
14	chr7:128076400-128083600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:128076400-128084000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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