Variant report

Variant	rs7784628
Chromosome Location	chr7:78078200-78078201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17150818	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs2110869	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs57042465	1.00[ASN][1000 genomes]
rs58067153	1.00[ASN][1000 genomes]
rs60512308	1.00[ASN][1000 genomes]
rs6968434	1.00[CHB][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78067000-78079800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:78072800-78079600	Weak transcription	Brain Angular Gyrus	brain
3	chr7:78072800-78079800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:78073200-78078400	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:78073600-78078200	Weak transcription	Brain Substantia Nigra	brain
6	chr7:78073600-78079600	Weak transcription	Brain Anterior Caudate	brain
7	chr7:78077200-78078200	Enhancers	Fetal Heart	heart
8	chr7:78077800-78079000	Enhancers	Fetal Intestine Large	intestine
9	chr7:78078000-78078400	Weak transcription	Brain Hippocampus Middle	brain
10	chr7:78078000-78079200	Enhancers	Fetal Intestine Small	intestine
11	chr7:78078200-78078400	Flanking Active TSS	Fetal Heart	heart
12	chr7:78078200-78078600	Enhancers	Duodenum Mucosa	Duodenum
13	chr7:78078200-78078800	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links