Variant report

Variant	rs7784730
Chromosome Location	chr7:56055863-56055864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:56055457..56057798-chr7:56063641..56066614,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs17172508	1.00[ASN][1000 genomes]
rs17664478	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3966180	1.00[ASN][1000 genomes]
rs4443615	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4495378	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4948095	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4948098	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4948103	1.00[ASN][1000 genomes]
rs4948107	1.00[ASN][1000 genomes]
rs4948108	1.00[ASN][1000 genomes]
rs58571234	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59193297	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59852874	1.00[ASN][1000 genomes]
rs6593298	1.00[ASN][1000 genomes]
rs66485869	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66741911	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67818657	1.00[ASN][1000 genomes]
rs6947109	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6954669	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73132850	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73132884	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73132888	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73134793	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73134796	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73138732	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73138736	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73138750	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73140745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73140778	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779821	1.00[ASN][1000 genomes]
rs7791221	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7806994	0.81[EUR][1000 genomes]
rs7808487	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7810142	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829874	chr7:55382925-56369816	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv995105	chr7:55606107-56174888	Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	esv12412	chr7:55619800-56385412	Strong transcription Flanking Active TSS Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
4	nsv949574	chr7:55705566-56544711	Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
5	nsv1019400	chr7:55709827-56094540	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	esv3446617	chr7:55745934-56485903	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	nsv529162	chr7:55800753-56174888	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
8	esv2761334	chr7:55823581-56424739	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
9	nsv888064	chr7:55831721-56104539	Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
10	nsv1018806	chr7:55844931-56383936	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
11	nsv538860	chr7:55844931-56383936	Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
12	nsv498114	chr7:55872850-56174888	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
13	nsv1034826	chr7:55962159-56092835	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv1033225	chr7:55962159-56094540	Genic enhancers Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv1017793	chr7:56051267-56098030	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7784730	CHCHD2	cis	Whole Blood	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:56033200-56081400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:56033800-56063000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:56033800-56065800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:56039200-56081600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:56039400-56062400	Weak transcription	Stomach Mucosa	stomach
6	chr7:56045000-56067400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr7:56045200-56068200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:56045400-56057400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr7:56045400-56057400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr7:56045400-56057600	Strong transcription	Dnd41	blood
11	chr7:56045400-56059200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr7:56045400-56067000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr7:56045400-56067000	Strong transcription	Liver	Liver
14	chr7:56045400-56067200	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr7:56045400-56067400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:56045600-56056400	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr7:56045600-56056800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:56045600-56057400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:56045600-56057600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr7:56045600-56062400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr7:56045600-56066600	Strong transcription	Fetal Stomach	stomach
22	chr7:56045600-56067400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:56045600-56067400	Strong transcription	Fetal Intestine Large	intestine
24	chr7:56045800-56056400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr7:56045800-56057400	Strong transcription	Adipose Nuclei	Adipose
26	chr7:56045800-56057400	Strong transcription	Duodenum Smooth Muscle	Duodenum
27	chr7:56045800-56057600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr7:56045800-56057600	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr7:56045800-56066800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:56045800-56068000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr7:56046000-56056800	Strong transcription	Brain Anterior Caudate	brain
32	chr7:56046000-56057400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:56046200-56058000	Strong transcription	Skeletal Muscle Male	skeletal muscle
34	chr7:56046200-56067200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr7:56046400-56056800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr7:56046400-56060800	Strong transcription	Stomach Smooth Muscle	stomach
37	chr7:56046400-56065800	Strong transcription	Fetal Muscle Leg	muscle
38	chr7:56046400-56068200	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr7:56046600-56057400	Strong transcription	Fetal Brain Female	brain
40	chr7:56046800-56060400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr7:56047000-56068400	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:56047200-56057400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr7:56047400-56057400	Strong transcription	Brain Germinal Matrix	brain
44	chr7:56048600-56059800	Weak transcription	Pancreas	Pancrea
45	chr7:56048600-56062800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr7:56048800-56062600	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr7:56048800-56062600	Weak transcription	Gastric	stomach
48	chr7:56048800-56062600	Weak transcription	Spleen	Spleen
49	chr7:56048800-56062800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr7:56049000-56062400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links