Variant report

Variant	rs7784890
Chromosome Location	chr7:140000075-140000076
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11761116	0.93[ASN][1000 genomes]
rs11763495	0.80[ASN][1000 genomes]
rs11769879	0.94[ASN][1000 genomes]
rs12538711	0.99[ASN][1000 genomes]
rs12703730	0.99[ASN][1000 genomes]
rs4275141	0.94[ASN][1000 genomes]
rs4339551	0.94[ASN][1000 genomes]
rs4358720	0.85[ASN][1000 genomes]
rs4632975	0.82[ASN][1000 genomes]
rs62491831	0.83[ASN][1000 genomes]
rs6464668	0.94[ASN][1000 genomes]
rs6464669	0.93[ASN][1000 genomes]
rs7800877	0.94[ASN][1000 genomes]
rs7805442	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139975600-140002600	Weak transcription	Right Atrium	heart
2	chr7:139986800-140007800	Weak transcription	Fetal Intestine Small	intestine
3	chr7:139994600-140004000	Weak transcription	K562	blood
4	chr7:139995000-140000200	Weak transcription	HepG2	liver
5	chr7:139997400-140000400	Weak transcription	Primary B cells from cord blood	blood
6	chr7:139999600-140008800	Weak transcription	Colonic Mucosa	Colon
7	chr7:139999800-140002400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr7:139999800-140004200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr7:140000000-140000200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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