Variant report

Variant	rs7784977
Chromosome Location	chr7:146152399-146152400
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs1011485	1.00[CEU][hapmap];0.93[CHB][hapmap]
rs1011486	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap]
rs10243810	0.84[JPT][hapmap]
rs10249426	0.84[JPT][hapmap]
rs10255515	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap]
rs10262298	0.84[JPT][hapmap]
rs10267655	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap]
rs10269958	0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs10275248	0.90[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs10952644	0.85[YRI][hapmap]
rs12667234	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs12672819	0.86[CEU][hapmap];0.93[CHB][hapmap];0.87[CHD][hapmap]
rs12673296	0.90[CEU][hapmap];0.93[CHB][hapmap];0.87[CHD][hapmap]
rs12703814	0.86[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap]
rs1358078	0.92[ASN][1000 genomes]
rs1526146	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[JPT][hapmap];0.92[YRI][hapmap]
rs1526147	0.88[CEU][hapmap];0.91[CHB][hapmap]
rs1526154	0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1526158	0.85[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap]
rs1526159	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs1526161	0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1558412	0.90[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1639432	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs1639437	0.84[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.90[ASN][1000 genomes]
rs1639438	0.81[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1639446	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1639460	0.90[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs1639465	0.90[CEU][hapmap];0.85[CHB][hapmap];0.87[CHD][hapmap]
rs1639470	0.90[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1639471	0.90[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1639480	0.84[JPT][hapmap]
rs1639481	0.84[JPT][hapmap]
rs1639483	0.87[JPT][hapmap]
rs1639484	0.84[JPT][hapmap]
rs1639516	0.85[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs17170106	0.90[CEU][hapmap];0.81[CHD][hapmap]
rs1718070	0.91[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1718076	0.84[JPT][hapmap]
rs1718093	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1724472	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1724497	0.90[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1724498	0.84[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1724506	0.90[ASN][1000 genomes]
rs1724507	0.91[ASN][1000 genomes]
rs1724528	0.86[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs1724532	0.81[ASN][1000 genomes]
rs17505462	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs17583547	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs2021559	0.86[CEU][hapmap];0.81[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs2030846	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.86[MEX][hapmap];0.92[TSI][hapmap]
rs2058375	0.84[JPT][hapmap]
rs2058376	0.84[JPT][hapmap]
rs2058377	0.84[JPT][hapmap]
rs2535749	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2535750	0.90[CEU][hapmap];0.93[CHB][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap]
rs2535753	0.80[ASN][1000 genomes]
rs2535754	0.86[CHB][hapmap]
rs2888335	0.90[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2888374	0.85[YRI][hapmap]
rs4109977	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4618611	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4725694	0.86[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs4726785	0.84[JPT][hapmap]
rs6464758	0.86[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs6464759	0.85[CEU][hapmap];0.86[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs6951145	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6955314	0.80[ASN][1000 genomes]
rs6978796	0.86[CEU][hapmap];0.86[CHB][hapmap];0.94[CHD][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs700273	0.94[CHD][hapmap];0.94[JPT][hapmap]
rs766503	0.81[ASN][1000 genomes]
rs7779185	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap]
rs7780801	0.86[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs7781575	0.86[CEU][hapmap];0.81[CHB][hapmap];0.87[CHD][hapmap]
rs7782757	0.90[CEU][hapmap];0.92[CHB][hapmap]
rs7784672	0.84[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7794014	0.90[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap]
rs7803018	0.84[CEU][hapmap]
rs7803472	0.85[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7805539	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs802191	0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs802196	0.86[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]
rs802200	0.80[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs802203	0.86[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs9771006	0.86[CEU][hapmap];0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv917027	chr7:146069317-146194011	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1024679	chr7:146091479-146248268	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1017138	chr7:146102286-146318562	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv889390	chr7:146111034-146239545	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1028798	chr7:146138480-146318562	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7784977	ZNF467	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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