Variant report

Variant	rs77851920
Chromosome Location	chr11:67142342-67142343
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:67141207-67142366	A549	lung:	n/a	n/a
2	EP300	chr11:67140889-67143973	A549	lung:	n/a	chr11:67141604-67141611 chr11:67143538-67143554 chr11:67140948-67140964 chr11:67141185-67141199
3	SIX5	chr11:67140867-67142749	A549	lung:	n/a	chr11:67141928-67141937
4	MAX	chr11:67141380-67142614	A549	lung:	n/a	n/a
5	POLR2A	chr11:67140037-67142665	Hela-S3	cervix:	n/a	n/a
6	ATF3	chr11:67141330-67142359	A549	lung:	n/a	chr11:67141369-67141378
7	FOXA2	chr11:67141025-67142703	A549	lung:	n/a	chr11:67142411-67142423
8	CTCF	chr11:67142320-67142470	AG09309	skin:	n/a	n/a
9	EP300	chr11:67140327-67143351	ECC-1	luminal epithelium:	n/a	chr11:67141604-67141611 chr11:67140948-67140964 chr11:67141185-67141199 chr11:67140686-67140702
10	SP1	chr11:67140841-67144091	A549	lung:	n/a	chr11:67143748-67143762 chr11:67141289-67141303 chr11:67141574-67141588 chr11:67141470-67141484 chr11:67141363-67141372 chr11:67141370-67141379 chr11:67141258-67141272 chr11:67141368-67141380 chr11:67140960-67140974 chr11:67140956-67140968 chr11:67143704-67143718 chr11:67141262-67141276 chr11:67143744-67143753 chr11:67141362-67141374 chr11:67142152-67142166 chr11:67141462-67141474 chr11:67142824-67142838 chr11:67140957-67140966 chr11:67142668-67142677 chr11:67143749-67143758 chr11:67141369-67141378 chr11:67141462-67141474 chr11:67140958-67140967 chr11:67141362-67141374 chr11:67141463-67141472 chr11:67141255-67141269 chr11:67142658-67142670 chr11:67142659-67142668 chr11:67142655-67142669 chr11:67142659-67142669 chr11:67141365-67141379 chr11:67141370-67141379 chr11:67143743-67143757 chr11:67141244-67141258 chr11:67141368-67141380 chr11:67142658-67142670 chr11:67140956-67140968
11	CEBPB	chr11:67140890-67142772	A549	lung:	n/a	n/a
12	MAX	chr11:67141159-67142664	ECC-1	luminal epithelium:	n/a	chr11:67141256-67141266 chr11:67141367-67141377
13	POLR2A	chr11:67140101-67142367	HL-60	blood:	n/a	n/a
14	SP1	chr11:67141010-67143373	HCT-116	colon:	n/a	chr11:67141289-67141303 chr11:67141574-67141588 chr11:67141470-67141484 chr11:67141363-67141372 chr11:67141370-67141379 chr11:67141258-67141272 chr11:67141368-67141380 chr11:67141262-67141276 chr11:67141362-67141374 chr11:67142152-67142166 chr11:67141462-67141474 chr11:67142824-67142838 chr11:67142668-67142677 chr11:67141369-67141378 chr11:67141462-67141474 chr11:67141362-67141374 chr11:67141463-67141472 chr11:67141255-67141269 chr11:67142658-67142670 chr11:67142659-67142668 chr11:67142655-67142669 chr11:67142659-67142669 chr11:67141365-67141379 chr11:67141370-67141379 chr11:67141244-67141258 chr11:67141368-67141380 chr11:67142658-67142670
15	MAX	chr11:67140849-67144150	A549	lung:	n/a	chr11:67141256-67141266 chr11:67141367-67141377
16	POLR2A	chr11:67142202-67142668	Hela-S3	cervix:	n/a	n/a
17	RCOR1	chr11:67140534-67142921	IMR90	lung:	n/a	n/a
18	POLR2A	chr11:67142195-67142698	SK-N-SH	brain:	n/a	n/a
19	POLR2A	chr11:67140497-67142891	U87	brain:	n/a	n/a
20	POLR2A	chr11:67142315-67142668	HCT-116	colon:	n/a	n/a
21	HDAC2	chr11:67140997-67142519	MCF-7	breast:	n/a	chr11:67141185-67141199 chr11:67141186-67141200 chr11:67141148-67141162 chr11:67141149-67141163 chr11:67141150-67141164 chr11:67141184-67141198 chr11:67141187-67141201 chr11:67141182-67141196 chr11:67141188-67141202
22	ZBTB33	chr11:67141339-67142501	A549	lung:	n/a	n/a
23	RFX5	chr11:67141505-67142509	Hela-S3	cervix:	n/a	chr11:67141897-67141912
24	TEAD4	chr11:67141340-67142684	ECC-1	luminal epithelium:	n/a	n/a
25	CHD1	chr11:67140091-67142532	IMR90	lung:	n/a	chr11:67140198-67140208 chr11:67141370-67141380 chr11:67141258-67141268
26	MYC	chr11:67141300-67142613	Hela-S3	cervix:	n/a	chr11:67141367-67141377
27	FOXA2	chr11:67141147-67143346	A549	lung:	n/a	chr11:67142411-67142423
28	GABPA	chr11:67141381-67142361	A549	lung:	n/a	n/a
29	POLR2A	chr11:67138593-67142764	PANC-1	pancreas:	n/a	n/a
30	SMARCC1	chr11:67141360-67142596	Hela-S3	cervix:	n/a	chr11:67141991-67142000
31	HEY1	chr11:67142342-67142631	K562	blood:	n/a	n/a
32	POLR2A	chr11:67140102-67142726	Hela-S3	cervix:	n/a	n/a
33	SP1	chr11:67140380-67144001	A549	lung:	n/a	chr11:67143748-67143762 chr11:67141289-67141303 chr11:67141574-67141588 chr11:67141470-67141484 chr11:67141363-67141372 chr11:67141370-67141379 chr11:67141258-67141272 chr11:67141368-67141380 chr11:67140960-67140974 chr11:67140956-67140968 chr11:67143704-67143718 chr11:67141262-67141276 chr11:67143744-67143753 chr11:67141362-67141374 chr11:67142152-67142166 chr11:67141462-67141474 chr11:67142824-67142838 chr11:67140957-67140966 chr11:67142668-67142677 chr11:67143749-67143758 chr11:67141369-67141378 chr11:67141462-67141474 chr11:67140958-67140967 chr11:67141362-67141374 chr11:67141463-67141472 chr11:67141255-67141269 chr11:67142658-67142670 chr11:67142659-67142668 chr11:67142655-67142669 chr11:67142659-67142669 chr11:67141365-67141379 chr11:67141370-67141379 chr11:67143743-67143757 chr11:67141244-67141258 chr11:67141368-67141380 chr11:67142658-67142670 chr11:67140956-67140968
34	TCF12	chr11:67137930-67144339	A549	lung:	n/a	chr11:67138193-67138203 chr11:67139958-67139965 chr11:67139242-67139249 chr11:67141661-67141671 chr11:67144056-67144066 chr11:67138192-67138199 chr11:67142524-67142532 chr11:67139957-67139967 chr11:67142516-67142526 chr11:67139956-67139963
35	PBX3	chr11:67140864-67142412	A549	lung:	n/a	n/a
36	GABPA	chr11:67141536-67142469	A549	lung:	n/a	n/a
37	NR3C1	chr11:67141042-67142454	A549	lung:	n/a	chr11:67141469-67141482 chr11:67141476-67141489 chr11:67141991-67142000 chr11:67141289-67141302 chr11:67141992-67142001
38	MAX	chr11:67141385-67142640	Hela-S3	cervix:	n/a	n/a
39	YY1	chr11:67141000-67142642	A549	lung:	n/a	chr11:67141468-67141479 chr11:67141019-67141033 chr11:67141369-67141378
40	ZBTB7A	chr11:67140316-67142522	ECC-1	luminal epithelium:	n/a	n/a
41	MXI1	chr11:67141536-67142546	Hela-S3	cervix:	n/a	n/a
42	POLR2A	chr11:67138915-67142701	MCF-7	breast:	n/a	n/a
43	NFIC	chr11:67140935-67142750	ECC-1	luminal epithelium:	n/a	n/a
44	MYC	chr11:67140794-67142764	A549	lung:	n/a	chr11:67141256-67141266 chr11:67141367-67141377
45	TFAP2C	chr11:67141506-67142490	Hela-S3	cervix:	n/a	chr11:67141826-67141841
46	ZBTB7A	chr11:67140469-67142357	K562	blood:	n/a	n/a
47	TEAD4	chr11:67141381-67142368	SK-N-SH	brain:	n/a	n/a
48	POLR2A	chr11:67141205-67142690	A549	lung:	n/a	n/a
49	BCL3	chr11:67140853-67142816	A549	lung:	n/a	chr11:67140958-67140967 chr11:67141685-67141698
50	CHD2	chr11:67140982-67142665	Hela-S3	cervix:	n/a	chr11:67141370-67141380 chr11:67141258-67141268

No.	Distal block	Cell Line	Cell type
1	chr11:67140165..67142541-chr11:67273740..67276217,2	MCF-7	breast:
2	chr11:66821897..66826528-chr11:67139094..67144065,11	MCF-7	breast:
3	chr11:67031846..67035344-chr11:67139453..67142374,3	K562	blood:
4	chr11:67083205..67091159-chr11:67142322..67150295,9	MCF-7	breast:
5	chr11:67006828..67010582-chr11:67138867..67142453,4	MCF-7	breast:
6	chr1:110752769..110754407-chr11:67141303..67143426,2	MCF-7	breast:
7	chr11:67053474..67057507-chr11:67138689..67143945,8	MCF-7	breast:
8	chr11:67033933..67038277-chr11:67140224..67143646,5	MCF-7	breast:
9	chr11:67141590..67142463-chr11:111749577..111750345,2	Hela-S3	cervix:
10	chr11:66823034..66824892-chr11:67139520..67142366,3	MCF-7	breast:
11	chr11:67140268..67142517-chr20:55839534..55841832,2	MCF-7	breast:
12	chr11:67141172..67143536-chr11:67171363..67173683,2	K562	blood:
13	chr11:67137032..67142528-chr11:67234580..67238729,6	MCF-7	breast:
14	chr11:67141684..67144612-chr14:62266117..62268626,2	MCF-7	breast:
15	chr11:67077940..67083214-chr11:67140082..67142904,6	MCF-7	breast:
16	chr11:67140485..67142430-chr11:67273527..67275502,2	K562	blood:
17	chr11:67138430..67143112-chr11:67157518..67161987,7	K562	blood:
18	chr11:67139623..67143035-chr11:67167894..67169679,3	K562	blood:
19	chr11:67140815..67142437-chr11:67396749..67399508,2	MCF-7	breast:
20	chr11:67140774..67143112-chr11:67157579..67159214,2	K562	blood:
21	chr11:67069246..67073295-chr11:67139634..67145393,8	MCF-7	breast:
22	chr11:67085218..67086846-chr11:67141974..67144447,2	K562	blood:
23	chr11:67140249..67142626-chr11:67380875..67383552,2	MCF-7	breast:
24	chr11:67078342..67081725-chr11:67139517..67143464,5	MCF-7	breast:
25	chr11:67030856..67037366-chr11:67138319..67144892,13	MCF-7	breast:
26	chr11:67116951..67127260-chr11:67135118..67146037,42	K562	blood:
27	chr11:67139414..67143301-chr11:67273275..67276817,6	MCF-7	breast:

Variant related genes	Relation type
CLCF1	TF binding region
ENSG00000256514	TF binding region
ENSG00000255561	Chromatin interaction
ENSG00000172613	Chromatin interaction
ENSG00000175463	Chromatin interaction
ENSG00000116396	Chromatin interaction
ENSG00000258529	Chromatin interaction
ENSG00000167797	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000172531	Chromatin interaction
ENSG00000137720	Chromatin interaction
ENSG00000167799	Chromatin interaction
ENSG00000172932	Chromatin interaction
ENSG00000172830	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000231793	Chromatin interaction
ENSG00000173156	Chromatin interaction
ENSG00000173020	Chromatin interaction
ENSG00000172663	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000173120	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
7	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
9	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
11	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
12	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
13	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
14	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
15	esv3334171	chr11:67142026-67144324	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67136800-67143600	Bivalent Enhancer	Fetal Thymus	thymus
2	chr11:67139600-67142400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr11:67140600-67142600	Bivalent Enhancer	Fetal Brain Male	brain
4	chr11:67141000-67142600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr11:67141200-67142400	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:67141400-67142400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:67141400-67142400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:67141400-67142400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
9	chr11:67141400-67142400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:67141400-67142400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:67141400-67142400	Flanking Active TSS	Rectal Smooth Muscle	rectum
12	chr11:67141400-67142400	Flanking Active TSS	Stomach Smooth Muscle	stomach
13	chr11:67141400-67142600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:67141400-67142600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:67141400-67142600	Flanking Active TSS	K562	blood
16	chr11:67141400-67142600	Flanking Active TSS	NH-A	brain
17	chr11:67141400-67142800	Flanking Active TSS	Hela-S3	cervix
18	chr11:67141600-67142400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
19	chr11:67141600-67142400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr11:67141600-67142400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr11:67141600-67142400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
22	chr11:67141600-67142400	Enhancers	Small Intestine	intestine
23	chr11:67141600-67142400	Flanking Active TSS	NHLF	lung
24	chr11:67141600-67142600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
25	chr11:67141600-67142600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr11:67141600-67142600	Bivalent Enhancer	Fetal Heart	heart
27	chr11:67141600-67142600	Flanking Active TSS	HMEC	breast
28	chr11:67141600-67143600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
29	chr11:67141800-67142400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
30	chr11:67141800-67142400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:67141800-67142400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
32	chr11:67141800-67142400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
33	chr11:67141800-67142400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:67141800-67142400	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
35	chr11:67141800-67142400	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
36	chr11:67141800-67142400	Enhancers	Brain Hippocampus Middle	brain
37	chr11:67141800-67142400	Enhancers	Left Ventricle	heart
38	chr11:67141800-67142400	Enhancers	Psoas Muscle	Psoas
39	chr11:67141800-67142400	Enhancers	Right Atrium	heart
40	chr11:67141800-67142600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
41	chr11:67141800-67142600	Enhancers	Lung	lung
42	chr11:67141800-67142600	Enhancers	Ovary	ovary
43	chr11:67141800-67142600	Bivalent Enhancer	Thymus	Thymus
44	chr11:67141800-67142800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
45	chr11:67141800-67143200	Enhancers	Primary monocytes fromperipheralblood	blood
46	chr11:67141800-67143200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr11:67141800-67143200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
48	chr11:67141800-67143200	Bivalent Enhancer	Placenta	Placenta
49	chr11:67141800-67143600	Enhancers	Primary B cells from peripheral blood	blood
50	chr11:67141800-67143600	Enhancers	Esophagus	oesophagus

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