Variant report

Variant	rs7785796
Chromosome Location	chr7:17880466-17880467
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:17861690..17863309-chr7:17878312..17881070,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2389831	1.00[ASW][hapmap]
rs7804831	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869352	chr7:17237983-17932878	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1021524	chr7:17251148-17963307	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv534309	chr7:17254118-17932878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv533938	chr7:17254118-18040301	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv887804	chr7:17571140-17885468	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1024398	chr7:17630148-18545073	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
7	nsv538764	chr7:17630148-18545073	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
8	esv1802979	chr7:17816528-17908546	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv830913	chr7:17848480-18034218	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	esv1792752	chr7:17853983-17908546	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1026629	chr7:17862477-18362404	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1025023	chr7:17865796-18357630	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:17812600-17887600	Weak transcription	Gastric	stomach
2	chr7:17817400-17887600	Weak transcription	Pancreas	Pancrea
3	chr7:17823600-17887600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr7:17825800-17887600	Weak transcription	Colonic Mucosa	Colon
5	chr7:17832000-17880600	Weak transcription	GM12878-XiMat	blood
6	chr7:17834000-17887800	Weak transcription	Right Ventricle	heart
7	chr7:17834800-17888800	Weak transcription	Brain Substantia Nigra	brain
8	chr7:17838800-17887600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:17839000-17932600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr7:17841200-17883800	Weak transcription	HMEC	breast
11	chr7:17841200-17902600	Weak transcription	Brain Anterior Caudate	brain
12	chr7:17843200-17881800	Weak transcription	A549	lung
13	chr7:17846000-17900600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:17847400-17880600	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr7:17847400-17887600	Weak transcription	Ovary	ovary
16	chr7:17847400-17887600	Weak transcription	Spleen	Spleen
17	chr7:17847600-17887600	Weak transcription	Fetal Stomach	stomach
18	chr7:17852600-17887800	Weak transcription	Brain Hippocampus Middle	brain
19	chr7:17852600-17896000	Weak transcription	Fetal Kidney	kidney
20	chr7:17852600-17902800	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:17852800-17880600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr7:17852800-17887000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr7:17852800-17890200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr7:17852800-17895000	Weak transcription	Brain Germinal Matrix	brain
25	chr7:17853400-17884200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr7:17853400-17887600	Weak transcription	Aorta	Aorta
27	chr7:17853600-17887400	Weak transcription	Left Ventricle	heart
28	chr7:17853600-17888000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr7:17853800-17914000	Weak transcription	Hela-S3	cervix
30	chr7:17854000-17884000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr7:17854000-17887800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr7:17854000-17900800	Weak transcription	K562	blood
33	chr7:17855200-17880600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr7:17855200-17887400	Weak transcription	Fetal Intestine Small	intestine
35	chr7:17855200-17887400	Weak transcription	Fetal Muscle Leg	muscle
36	chr7:17855400-17887600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:17857200-17887400	Weak transcription	NHLF	lung
38	chr7:17859200-17887600	Weak transcription	Esophagus	oesophagus
39	chr7:17860800-17885000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:17861400-17880600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr7:17862800-17883000	Weak transcription	HUVEC	blood vessel
42	chr7:17862800-17888000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr7:17862800-17894800	Weak transcription	Psoas Muscle	Psoas
44	chr7:17863800-17884400	Weak transcription	NHEK	skin
45	chr7:17870400-17883400	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr7:17870600-17887600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr7:17871800-17882000	Strong transcription	Liver	Liver
48	chr7:17871800-17887600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr7:17872600-17883200	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr7:17872600-17889400	Weak transcription	Fetal Brain Male	brain

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