Variant report

Variant	rs7785813
Chromosome Location	chr7:140357220-140357221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140352705..140358390-chr7:140370477..140374283,7	MCF-7	breast:
2	chr7:140178651..140180192-chr7:140355165..140357429,2	MCF-7	breast:
3	chr7:140356234..140358588-chr7:140371842..140375478,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133606	Chromatin interaction
ENSG00000146966	Chromatin interaction
ENSG00000133597	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs57010941	1.00[ASN][1000 genomes]
rs59286433	1.00[ASN][1000 genomes]
rs59494652	1.00[ASN][1000 genomes]
rs6464932	1.00[ASN][1000 genomes]
rs73491657	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73502440	1.00[ASN][1000 genomes]
rs73503801	1.00[ASN][1000 genomes]
rs7778495	1.00[EUR][1000 genomes]
rs7796005	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799637	1.00[EUR][1000 genomes]
rs7805683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809339	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140351800-140358000	Weak transcription	Gastric	stomach
2	chr7:140355400-140357400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:140355400-140358400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:140355600-140357400	Enhancers	Placenta	Placenta
5	chr7:140355600-140357400	Enhancers	Stomach Mucosa	stomach
6	chr7:140355600-140357600	Enhancers	Fetal Muscle Leg	muscle
7	chr7:140355800-140357400	Enhancers	Placenta Amnion	Placenta Amnion
8	chr7:140356000-140357400	Enhancers	Fetal Thymus	thymus
9	chr7:140356000-140357400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
10	chr7:140356400-140357400	Flanking Bivalent TSS/Enh	HepG2	liver
11	chr7:140356600-140357400	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:140356600-140357400	Enhancers	Lung	lung
13	chr7:140356800-140357400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:140356800-140357400	Enhancers	Right Atrium	heart
15	chr7:140356800-140357600	Enhancers	Thymus	Thymus
16	chr7:140357000-140357400	Enhancers	Liver	Liver
17	chr7:140357000-140357400	Enhancers	Brain Anterior Caudate	brain
18	chr7:140357000-140357400	Enhancers	Colon Smooth Muscle	Colon
19	chr7:140357000-140357400	Enhancers	Duodenum Mucosa	Duodenum
20	chr7:140357000-140357400	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr7:140357000-140357400	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr7:140357000-140357400	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr7:140357000-140357400	Enhancers	GM12878-XiMat	blood
24	chr7:140357000-140358200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr7:140357000-140358400	Weak transcription	Osteobl	bone
26	chr7:140357000-140361000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr7:140357200-140357400	Enhancers	Adipose Nuclei	Adipose
28	chr7:140357200-140357400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr7:140357200-140357600	Enhancers	Stomach Smooth Muscle	stomach
30	chr7:140357200-140358000	Weak transcription	Fetal Muscle Trunk	muscle
31	chr7:140357200-140358200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:140357200-140360200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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