Variant report

Variant	rs7786844
Chromosome Location	chr7:99934008-99934009
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:251)
CpG islands
(count:183)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:251 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POU2F2	chr7:99933066-99934231	GM12878	blood:	n/a	n/a
2	POLR2A	chr7:99933346-99934041	HepG2	liver:	n/a	n/a
3	FOXP2	chr7:99933253-99934040	PFSK-1	brain:	n/a	n/a
4	E2F6	chr7:99933644-99934043	K562	blood:	n/a	chr7:99933989-99933998
5	POLR2A	chr7:99933284-99934140	GM12892	blood:	n/a	n/a
6	RUNX3	chr7:99933615-99934020	GM12878	blood:	n/a	n/a
7	GABPA	chr7:99933346-99934137	MCF-7	breast:	n/a	chr7:99933988-99933997 chr7:99933988-99933999 chr7:99933988-99934002
8	TAF1	chr7:99933096-99934190	H1-hESC	embryonic stem cell:	n/a	n/a
9	TAF1	chr7:99933280-99934094	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr7:99933137-99934169	MCF-7	breast:	n/a	n/a
11	SP1	chr7:99933145-99934023	HepG2	liver:	n/a	chr7:99933601-99933612 chr7:99933584-99933595 chr7:99933191-99933205
12	EP300	chr7:99933091-99934025	GM12878	blood:	n/a	chr7:99933998-99934014
13	MXI1	chr7:99933349-99934037	HepG2	liver:	n/a	n/a
14	CBX3	chr7:99933106-99934293	K562	blood:	n/a	n/a
15	REST	chr7:99933394-99934042	H1-neurons	neurons:	n/a	chr7:99934010-99934023 chr7:99934010-99934023 chr7:99934010-99934023
16	POLR2A	chr7:99933105-99934230	GM12878	blood:	n/a	n/a
17	GATA2	chr7:99933069-99934150	K562	blood:	n/a	n/a
18	POLR2A	chr7:99933296-99934026	K562	blood:	n/a	n/a
19	TAF1	chr7:99933078-99934394	Hela-S3	cervix:	n/a	n/a
20	POLR2A	chr7:99933291-99934100	K562	blood:	n/a	n/a
21	NRF1	chr7:99933830-99934162	H1-hESC	embryonic stem cell:	n/a	chr7:99933988-99933997 chr7:99933988-99933999 chr7:99933987-99933998 chr7:99933988-99934002
22	CEBPD	chr7:99933558-99934081	K562	blood:	n/a	n/a
23	POLR2A	chr7:99933348-99934012	HUVEC	blood vessel:	n/a	n/a
24	ELF1	chr7:99933444-99934090	MCF-7	breast:	n/a	n/a
25	TAF1	chr7:99933066-99934329	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr7:99933517-99934090	HL-60	blood:	n/a	n/a
27	PML	chr7:99933635-99934064	GM12878	blood:	n/a	n/a
28	POLR2A	chr7:99933244-99934050	MCF10A-Er-Src	breast:	n/a	n/a
29	IRF4	chr7:99933098-99934074	GM12878	blood:	n/a	n/a
30	ETS1	chr7:99933705-99934011	A549	lung:	n/a	n/a
31	POLR2A	chr7:99933162-99934117	Hela-S3	cervix:	n/a	n/a
32	POLR2A	chr7:99933288-99934010	GM12878	blood:	n/a	n/a
33	TAF1	chr7:99933089-99934177	HepG2	liver:	n/a	n/a
34	POLR2A	chr7:99933111-99934280	Hela-S3	cervix:	n/a	n/a
35	POLR2A	chr7:99933213-99934105	U87	brain:	n/a	n/a
36	POLR2A	chr7:99933524-99934022	H1-neurons	neurons:	n/a	n/a
37	MYC	chr7:99933616-99934086	MCF-7	breast:	n/a	n/a
38	POLR2A	chr7:99932916-99934440	PFSK-1	brain:	n/a	n/a
39	FOXA2	chr7:99933313-99934110	A549	lung:	n/a	n/a
40	SIN3AK20	chr7:99933625-99934145	K562	blood:	n/a	n/a
41	HEY1	chr7:99933067-99934397	K562	blood:	n/a	n/a
42	POLR2A	chr7:99933143-99934101	A549	lung:	n/a	n/a
43	MAX	chr7:99933635-99934121	K562	blood:	n/a	n/a
44	ELF1	chr7:99933469-99934043	MCF-7	breast:	n/a	n/a
45	POLR2A	chr7:99933626-99934044	K562	blood:	n/a	n/a
46	TAF1	chr7:99933295-99934084	K562	blood:	n/a	n/a
47	CREB1	chr7:99933516-99934100	GM12878	blood:	n/a	n/a
48	POLR2A	chr7:99933040-99934238	SK-N-MC	brain:	n/a	n/a
49	CCNT2	chr7:99933704-99934158	K562	blood:	n/a	n/a
50	POLR2A	chr7:99933089-99934363	PANC-1	pancreas:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:99933968-99934018	HRCEpiC	kidney:	n/a
2	chr7:99934006-99934056	MCF-7	breast:	n/a
3	chr7:99934006-99934056	HRCEpiC	kidney:	n/a
4	chr7:99933968-99934018	AG04450	lung:	fetal
5	chr7:99934001-99934051	LNCaP	prostate:	n/a
6	chr7:99934001-99934051	HRE	kidney:	n/a
7	chr7:99934001-99934051	SK-N-SH_RA	brain:	n/a
8	chr7:99934006-99934056	BE2_C	brain:	n/a
9	chr7:99934006-99934056	T-47D	breast:	n/a
10	chr7:99934006-99934056	K562	blood:	n/a
11	chr7:99934006-99934056	HepG2	liver:	n/a
12	chr7:99934006-99934056	GM06990	blood:	n/a
13	chr7:99934001-99934051	HPAEpiC	pulmonary alveolar:	n/a
14	chr7:99933968-99934018	AoSMC	blood vessel:	n/a
15	chr7:99933968-99934018	HIPEpiC	eye:	n/a
16	chr7:99933968-99934018	GM06990	blood:	n/a
17	chr7:99934006-99934056	GM12878	blood:	n/a
18	chr7:99934001-99934051	H1-hESC	embryonic stem cell:	embryo
19	chr7:99934001-99934051	HEEpiC	esophagus:	n/a
20	chr7:99933968-99934018	SK-N-MC	brain:	n/a
21	chr7:99934001-99934051	HAEpiC	amniotic membrane:	n/a
22	chr7:99933968-99934018	MCF10A-Er-Src	breast:	n/a
23	chr7:99934006-99934056	H1-hESC	embryonic stem cell:	embryo
24	chr7:99934001-99934051	Hela-S3	cervix:	n/a
25	chr7:99934006-99934056	HCF	heart:	n/a
26	chr7:99933968-99934018	T-47D	breast:	n/a
27	chr7:99933968-99934018	Jurkat	blood:	n/a
28	chr7:99934001-99934051	PrEC	prostate:	n/a
29	chr7:99933968-99934018	MCF-7	breast:	n/a
30	chr7:99934001-99934051	MCF10A-Er-Src	breast:	n/a
31	chr7:99933968-99934018	NT2-D1	testis:	n/a
32	chr7:99933968-99934018	SKMC	muscle:	n/a
33	chr7:99934006-99934056	HMEC	breast:	n/a
34	chr7:99933968-99934018	AG04449	skin:	fetal
35	chr7:99933968-99934018	IMR90	lung:	fetal
36	chr7:99933968-99934018	NHDF-neo	bronchial:	n/a
37	chr7:99933968-99934018	GM12891	blood:	n/a
38	chr7:99933968-99934018	HCM	heart:	n/a
39	chr7:99934006-99934056	HCM	heart:	n/a
40	chr7:99934006-99934056	SK-N-SH	brain:	n/a
41	chr7:99934001-99934051	GM12878	blood:	n/a
42	chr7:99934001-99934051	GM12891	blood:	n/a
43	chr7:99933968-99934018	HCF	heart:	n/a
44	chr7:99933968-99934018	ECC-1	luminal epithelium:	n/a
45	chr7:99933968-99934018	HNPCEpiC	eye:	n/a
46	chr7:99934001-99934051	HMEC	breast:	n/a
47	chr7:99934001-99934051	HCPEpiC	choroid plexus:	n/a
48	chr7:99934001-99934051	BE2_C	brain:	n/a
49	chr7:99933968-99934018	HCPEpiC	choroid plexus:	n/a
50	chr7:99933968-99934018	AG09319	gingival:	n/a

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:99932595..99935080-chr7:100025979..100028387,3	K562	blood:
2	chr7:6048837..6049368-chr7:99933514..99934016,2	Hela-S3	cervix:
3	chr7:99932349..99935076-chr7:100025979..100028387,3	K562	blood:
4	chr7:66767136..66768124-chr7:99933487..99934025,2	HCT-116	colon:
5	chr1:35658693..35659210-chr7:99933428..99934253,2	Hela-S3	cervix:
6	chr5:36876650..36877236-chr7:99933531..99934342,2	Hela-S3	cervix:
7	chr7:99765936..99768056-chr7:99933468..99935315,2	MCF-7	breast:
8	chr7:99932318..99935048-chr7:100026420..100028378,2	MCF-7	breast:
9	chr7:99715815..99718290-chr7:99932504..99934640,2	MCF-7	breast:
10	chr7:99932234..99937909-chr7:99939373..99942446,6	K562	blood:
11	chr7:99933746..99935432-chr7:100238068..100240501,2	K562	blood:
12	chr7:99933438..99934039-chr7:100026430..100027170,2	NB4	blood:
13	chr7:99931911..99935442-chr7:99938364..99941933,5	MCF-7	breast:

No data

Variant related genes	Relation type
STAG3L5P	TF binding region
PMS2P1	TF binding region
STAG3L5P	CpG island
PMS2P1	CpG island
ENSG00000106290	Chromatin interaction
ENSG00000164190	Chromatin interaction
ENSG00000067601	Chromatin interaction
ENSG00000106610	Chromatin interaction
ENSG00000078487	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000116560	Chromatin interaction
ENSG00000197093	Chromatin interaction
ENSG00000106327	Chromatin interaction
ENSG00000106305	Chromatin interaction
ENSG00000166997	Chromatin interaction
ENSG00000078319	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 45 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1000215	0.84[ASN][1000 genomes]
rs10085549	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1059129	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1063945	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761253	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761306	1.00[ASN][1000 genomes]
rs11761426	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763414	0.84[ASN][1000 genomes]
rs11765869	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11766917	0.83[ASN][1000 genomes]
rs11768933	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768967	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769057	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11769886	0.84[ASN][1000 genomes]
rs11771241	0.84[ASN][1000 genomes]
rs11771419	1.00[ASN][1000 genomes]
rs11771799	1.00[ASN][1000 genomes]
rs11771936	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1636980	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1964242	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2003507	0.84[ASN][1000 genomes]
rs2108269	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28401739	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28490152	0.84[ASN][1000 genomes]
rs28495773	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28660238	0.84[ASN][1000 genomes]
rs28680963	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3087502	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35111986	0.84[ASN][1000 genomes]
rs35986051	1.00[ASN][1000 genomes]
rs3900792	0.84[ASN][1000 genomes]
rs3991498	0.93[EUR][1000 genomes]
rs3991564	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41280971	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61735533	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66632384	0.84[ASN][1000 genomes]
rs67163493	0.84[ASN][1000 genomes]
rs67315960	0.84[ASN][1000 genomes]
rs67471932	0.84[ASN][1000 genomes]
rs68116612	0.84[ASN][1000 genomes]
rs6945952	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6946768	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6948685	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953749	0.84[ASN][1000 genomes]
rs6955367	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957928	0.84[ASN][1000 genomes]
rs6965207	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965458	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970806	0.84[ASN][1000 genomes]
rs6975563	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6975660	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979910	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs705866	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73161745	0.85[ASN][1000 genomes]
rs73161759	0.84[ASN][1000 genomes]
rs73161762	0.84[ASN][1000 genomes]
rs73401443	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401450	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73401451	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341507	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7783159	0.84[ASN][1000 genomes]
rs7783550	1.00[ASN][1000 genomes]
rs7792525	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7792959	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7795656	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7795805	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799894	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799901	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7799932	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7803454	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	nsv427794	chr7:99750981-99960900	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv428180	chr7:99750981-99960900	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv888774	chr7:99807265-99951315	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	esv16057	chr7:99809377-99937347	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
6	esv3379367	chr7:99811760-99938687	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	esv3379649	chr7:99812207-99939196	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
8	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
9	esv3358931	chr7:99816130-99943645	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
10	esv3405423	chr7:99816156-99943860	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	esv3508070	chr7:99816206-99943813	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
12	esv3508071	chr7:99816206-99943813	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
13	esv1817757	chr7:99896488-99935709	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
14	nsv8183	chr7:99896574-99936641	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
15	esv16361	chr7:99898203-99934029	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
16	esv1830570	chr7:99901968-99945827	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
17	esv1817228	chr7:99904585-99935709	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
18	nsv970561	chr7:99904859-99936381	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
19	nsv831071	chr7:99918025-100113413	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	287 gene(s)	inside rSNPs	diseases

mRNA abundance (count:45)

SNP	Gene	Cis/trans	Tissue	Source
rs7786844	PILRA	cis	Adipose Subcutaneous	GTEx
rs7786844	STAG3L5P	cis	Esophagus Muscularis	GTEx
rs7786844	PILRA	cis	Esophagus Mucosa	GTEx
rs7786844	PVRIG2P	cis	Heart Left Ventricle	GTEx
rs7786844	PILRA	cis	Artery Aorta	GTEx
rs7786844	PILRB	cis	Esophagus Muscularis	GTEx
rs7786844	PVRIG2P	cis	Artery Tibial	GTEx
rs7786844	STAG3L5P	cis	Heart Left Ventricle	GTEx
rs7786844	PVRIG2P	cis	Thyroid	GTEx
rs7786844	STAG3L5P	cis	Nerve Tibial	GTEx
rs7786844	PILRB	Cis_1M	lymphoblastoid	RTeQTL
rs7786844	PVRIG	Cis_1M	lymphoblastoid	RTeQTL
rs7786844	PILRB	cis	Esophagus Mucosa	GTEx
rs7786844	PILRB	cis	Adipose Subcutaneous	GTEx
rs7786844	PVRIG2P	cis	Esophagus Mucosa	GTEx
rs7786844	PILRB	cis	Skin Sun Exposed Lower leg	GTEx
rs7786844	STAG3L5P	cis	Skin Sun Exposed Lower leg	GTEx
rs7786844	PILRB	cis	Artery Tibial	GTEx
rs7786844	PILRA	cis	Artery Tibial	GTEx
rs7786844	PILRA	cis	Nerve Tibial	GTEx
rs7786844	PILRB	cis	Heart Left Ventricle	GTEx
rs7786844	PILRA	cis	Muscle Skeletal	GTEx
rs7786844	PILRB	cis	Thyroid	GTEx
rs7786844	PILRA	cis	Stomach	GTEx
rs7786844	STAG3L5P	cis	Esophagus Mucosa	GTEx
rs7786844	STAG3L5P	cis	Adipose Subcutaneous	GTEx
rs7786844	STAG3L5P	cis	Artery Tibial	GTEx
rs7786844	PILRA	cis	Esophagus Muscularis	GTEx
rs7786844	PILRB	cis	Whole Blood	GTEx
rs7786844	PILRB	cis	lung	GTEx
rs7786844	PILRA	cis	Thyroid	GTEx
rs7786844	PVRIG2P	cis	Adipose Subcutaneous	GTEx
rs7786844	STAG3L5P	cis	Artery Aorta	GTEx
rs7786844	PILRA	cis	Heart Left Ventricle	GTEx
rs7786844	PILRB	cis	multi-tissue	Pritchard
rs7786844	PILRB	cis	Muscle Skeletal	GTEx
rs7786844	PVRIG2P	cis	lung	GTEx
rs7786844	STAG3L5P	cis	lung	GTEx
rs7786844	STAG3L5P	cis	Thyroid	GTEx
rs7786844	STAG3L5P	cis	Muscle Skeletal	GTEx
rs7786844	PILRA	cis	Skin Sun Exposed Lower leg	GTEx
rs7786844	STAG3	Cis_1M	lymphoblastoid	RTeQTL
rs7786844	PVRIG2P	cis	Nerve Tibial	GTEx
rs7786844	STAG3L5P	cis	Stomach	GTEx
rs7786844	PILRB	cis	Nerve Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99932200-99934200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:99932200-99934400	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr7:99932200-99935000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr7:99932200-99935000	Active TSS	K562	blood
5	chr7:99932200-99935200	Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr7:99932200-99935200	Active TSS	A549	lung
7	chr7:99932400-99935000	Active TSS	Dnd41	blood
8	chr7:99932600-99934400	Active TSS	Primary hematopoietic stem cells	blood
9	chr7:99932600-99934800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr7:99932600-99934800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:99932600-99934800	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr7:99932600-99935000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr7:99932600-99935000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr7:99932600-99935000	Active TSS	Hela-S3	cervix
15	chr7:99932600-99935000	Active TSS	HMEC	breast
16	chr7:99932600-99935000	Active TSS	NHEK	skin
17	chr7:99932600-99935200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr7:99932600-99935400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:99932800-99934200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:99932800-99934200	Active TSS	Primary T cells from cord blood	blood
21	chr7:99932800-99934200	Active TSS	Primary T helper naive cells from peripheral blood	blood
22	chr7:99932800-99934200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
23	chr7:99932800-99934200	Active TSS	Primary T killer memory cells from peripheral blood	blood
24	chr7:99932800-99934200	Active TSS	Brain Angular Gyrus	brain
25	chr7:99932800-99934200	Active TSS	Brain Cingulate Gyrus	brain
26	chr7:99932800-99934200	Active TSS	Brain Hippocampus Middle	brain
27	chr7:99932800-99934200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
28	chr7:99932800-99934200	Active TSS	Esophagus	oesophagus
29	chr7:99932800-99934200	Active TSS	Fetal Kidney	kidney
30	chr7:99932800-99934200	Active TSS	Fetal Lung	lung
31	chr7:99932800-99934200	Active TSS	Gastric	stomach
32	chr7:99932800-99934200	Active TSS	Placenta Amnion	Placenta Amnion
33	chr7:99932800-99934200	Active TSS	NHDF-Ad	bronchial
34	chr7:99932800-99934400	Active TSS	H9 Cell Line	embryonic stem cell
35	chr7:99932800-99934400	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr7:99932800-99934400	Active TSS	iPS-18 Cell Line	embryonic stem cell
37	chr7:99932800-99934400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr7:99932800-99934400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
39	chr7:99932800-99934400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr7:99932800-99934400	Active TSS	Muscle Satellite Cultured Cells	--
41	chr7:99932800-99934400	Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr7:99932800-99934400	Active TSS	Brain Germinal Matrix	brain
43	chr7:99932800-99934400	Active TSS	Brain Substantia Nigra	brain
44	chr7:99932800-99934400	Active TSS	Colonic Mucosa	Colon
45	chr7:99932800-99934400	Active TSS	Fetal Brain Female	brain
46	chr7:99932800-99934400	Active TSS	Fetal Intestine Large	intestine
47	chr7:99932800-99934400	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr7:99932800-99934400	Active TSS	Fetal Muscle Trunk	muscle
49	chr7:99932800-99934400	Active TSS	Fetal Stomach	stomach
50	chr7:99932800-99934400	Active TSS	Ovary	ovary

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