Variant report

Variant	rs7787017
Chromosome Location	chr7:140319153-140319154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140314792..140316521-chr7:140318510..140320433,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10252031	1.00[YRI][hapmap]
rs10952779	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11767550	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17621539	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs269232	0.91[CEU][hapmap]
rs269241	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7792863	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9691566	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1021133	chr7:140270797-140338653	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv1029128	chr7:140293389-140335570	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7787017	TMEM178B	cis	Esophagus Mucosa	GTEx

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140267800-140326000	Weak transcription	Gastric	stomach
2	chr7:140287600-140326000	Weak transcription	Fetal Brain Male	brain
3	chr7:140296000-140326000	Weak transcription	Fetal Heart	heart
4	chr7:140302200-140326200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:140302400-140326200	Weak transcription	Fetal Brain Female	brain
6	chr7:140302800-140326000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:140307600-140326000	Weak transcription	Spleen	Spleen
8	chr7:140307800-140320400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:140308000-140320400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr7:140308400-140324000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr7:140308800-140322800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:140308800-140323800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:140310800-140320600	Weak transcription	NHDF-Ad	bronchial
14	chr7:140310800-140323800	Weak transcription	Fetal Lung	lung
15	chr7:140310800-140326400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr7:140311000-140320400	Weak transcription	NH-A	brain
17	chr7:140311200-140321600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:140311200-140323600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:140311400-140320400	Weak transcription	Fetal Muscle Trunk	muscle
20	chr7:140312200-140321200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:140315000-140323800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr7:140315400-140321600	Weak transcription	Fetal Stomach	stomach
23	chr7:140315400-140323000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr7:140317000-140321400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr7:140317200-140320800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:140317600-140323800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:140318000-140321600	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr7:140318000-140322600	Weak transcription	Fetal Muscle Leg	muscle
29	chr7:140318200-140320400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr7:140318200-140320600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr7:140318600-140320000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr7:140318600-140320200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:140318600-140320400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:140318600-140320400	Weak transcription	NHLF	lung
35	chr7:140318800-140319200	Enhancers	Brain Germinal Matrix	brain
36	chr7:140319000-140319200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr7:140319000-140323800	Weak transcription	Placenta	Placenta

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