Variant report

Variant	rs77874486
Chromosome Location	chr12:57151504-57151505
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57150311..57153103-chr12:57398396..57401285,2	MCF-7	breast:
2	chr12:57151018..57151992-chr12:57381056..57381889,5	MCF-7	breast:
3	chr12:57149918..57152187-chr12:57404047..57405928,2	K562	blood:
4	chr12:57150977..57151614-chr12:57395177..57395873,2	K562	blood:
5	chr12:57150950..57151790-chr12:57394950..57395598,3	MCF-7	breast:
6	chr12:57150950..57152350-chr12:57399953..57400860,10	MCF-7	breast:
7	chr12:57151005..57151996-chr12:57381006..57381955,2	K562	blood:
8	chr12:57151016..57151605-chr12:57454267..57455043,2	MCF-7	breast:
9	chr12:57149951..57151627-chr12:57398586..57401360,2	MCF-7	breast:
10	chr12:57145785..57147795-chr12:57149952..57152376,3	K562	blood:
11	chr12:57151068..57151887-chr12:57394600..57395459,3	MCF-7	breast:
12	chr12:57150330..57152277-chr12:57456345..57457939,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040850	chr12:57055011-57679209	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
2	esv1794914	chr12:57119236-57195379	Active TSS Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv826382	chr12:57151464-57208607	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57146400-57160400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr12:57150000-57152000	Weak transcription	Pancreas	Pancrea
3	chr12:57150200-57152200	Enhancers	Liver	Liver
4	chr12:57151000-57151800	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr12:57151400-57151800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr12:57151400-57152000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:57151400-57153200	ZNF genes & repeats	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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