Variant report

Variant	rs7788166
Chromosome Location	chr7:140778424-140778425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10277943	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6464239	0.81[EUR][1000 genomes]
rs6464264	0.81[EUR][1000 genomes]
rs6464315	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73498965	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889248	chr7:140754785-140809205	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3417140	chr7:140768130-140783190	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140774800-140783200	Weak transcription	Pancreas	Pancrea
2	chr7:140776000-140778600	Active TSS	Brain Anterior Caudate	brain
3	chr7:140776800-140782800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:140776800-140783200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr7:140776800-140783200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:140776800-140783200	Weak transcription	Brain Angular Gyrus	brain
7	chr7:140776800-140783200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:140776800-140783200	Weak transcription	Fetal Brain Male	brain
9	chr7:140777000-140785000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:140777200-140778600	Enhancers	Brain Germinal Matrix	brain
11	chr7:140777200-140778600	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr7:140778000-140793200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr7:140778200-140778600	Weak transcription	Fetal Brain Female	brain
14	chr7:140778400-140778800	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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