Variant report

Variant	rs7788376
Chromosome Location	chr7:27655850-27655851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TAX1BP1-1	chr7:27655593-27656414	ENSG00000233400

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1009253	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34698857	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6961867	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7788376	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27615600-27657800	Weak transcription	Aorta	Aorta
2	chr7:27628200-27658400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:27628600-27658400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr7:27630400-27656800	Weak transcription	Stomach Smooth Muscle	stomach
5	chr7:27644400-27658400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr7:27646200-27657800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:27646600-27656600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr7:27646600-27658400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:27646800-27657800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr7:27646800-27658800	Weak transcription	Osteobl	bone
11	chr7:27646800-27659600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:27647000-27657200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:27647000-27660200	Weak transcription	Small Intestine	intestine
14	chr7:27648600-27659800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr7:27648800-27657800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr7:27648800-27658200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:27648800-27658200	Weak transcription	HSMMtube	muscle
18	chr7:27649000-27658400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr7:27649200-27658000	Weak transcription	K562	blood
20	chr7:27649200-27659400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:27650000-27657000	Weak transcription	A549	lung
22	chr7:27651200-27657200	Weak transcription	Fetal Kidney	kidney
23	chr7:27651200-27657800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr7:27651200-27658000	Weak transcription	NHDF-Ad	bronchial
25	chr7:27651200-27658600	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr7:27651400-27658400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr7:27651600-27656800	Weak transcription	NHEK	skin
28	chr7:27651600-27657600	Weak transcription	Fetal Heart	heart
29	chr7:27651600-27659200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr7:27651800-27674200	Weak transcription	Hela-S3	cervix
31	chr7:27652200-27657600	Weak transcription	Adipose Nuclei	Adipose
32	chr7:27652400-27658600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr7:27652400-27658600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr7:27653200-27659400	Weak transcription	Brain Hippocampus Middle	brain
35	chr7:27654000-27657400	Weak transcription	Spleen	Spleen
36	chr7:27654000-27658200	Weak transcription	Brain Anterior Caudate	brain
37	chr7:27654200-27657400	Weak transcription	Right Ventricle	heart
38	chr7:27654200-27658400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr7:27654400-27656800	Strong transcription	HSMM	muscle
40	chr7:27654400-27658000	Weak transcription	Primary T cells fromperipheralblood	blood
41	chr7:27654400-27658600	Weak transcription	Brain Substantia Nigra	brain
42	chr7:27654400-27658600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr7:27654400-27696400	Weak transcription	Gastric	stomach
44	chr7:27654800-27656200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr7:27654800-27656400	Strong transcription	Placenta	Placenta
46	chr7:27655000-27656200	Strong transcription	Pancreas	Pancrea
47	chr7:27655200-27656800	Weak transcription	Primary B cells from cord blood	blood
48	chr7:27655200-27660400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr7:27655400-27656000	Enhancers	Liver	Liver
50	chr7:27655400-27656400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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