Variant report

Variant	rs7788522
Chromosome Location	chr7:11865522-11865523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12111826	0.86[ASN][1000 genomes]
rs12672168	0.86[ASN][1000 genomes]
rs16877200	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16877205	0.96[ASN][1000 genomes]
rs16877210	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17165246	0.83[EUR][1000 genomes]
rs17165253	0.86[EUR][1000 genomes]
rs17165261	0.89[ASN][1000 genomes]
rs17165265	0.89[ASN][1000 genomes]
rs1815107	0.83[EUR][1000 genomes]
rs59090152	0.83[ASN][1000 genomes]
rs73676207	1.00[ASN][1000 genomes]
rs73676214	0.89[ASN][1000 genomes]
rs73676254	0.89[ASN][1000 genomes]
rs73676255	0.89[ASN][1000 genomes]
rs73676258	0.89[ASN][1000 genomes]
rs73676259	0.89[ASN][1000 genomes]
rs73676260	0.89[ASN][1000 genomes]
rs7786553	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv887614	chr7:11778424-12211198	Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv830905	chr7:11793513-11941594	Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3332546	chr7:11865256-11865633	Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11858400-11869800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:11858800-11869000	Weak transcription	Fetal Lung	lung
3	chr7:11860600-11869200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:11865400-11867000	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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