Variant report

Variant	rs7788558
Chromosome Location	chr7:70684291-70684292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10950250	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs10950251	0.82[GIH][hapmap];0.82[TSI][hapmap]
rs11981051	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs12538186	0.89[GIH][hapmap];0.85[TSI][hapmap]
rs12539391	0.82[GIH][hapmap];0.87[TSI][hapmap]
rs12666361	0.84[TSI][hapmap]
rs12668663	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs17142940	0.92[YRI][hapmap]
rs17592881	0.89[GIH][hapmap];0.85[TSI][hapmap]
rs17593300	0.89[GIH][hapmap];0.85[TSI][hapmap]
rs2190223	0.82[TSI][hapmap]
rs2190224	0.82[GIH][hapmap]
rs2867044	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs35137955	0.82[EUR][1000 genomes]
rs757841	0.89[GIH][hapmap];0.87[TSI][hapmap]
rs7786194	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7802241	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9638288	1.00[CEU][hapmap];0.81[YRI][hapmap];0.97[EUR][1000 genomes]
rs9638291	0.82[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.84[JPT][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1034662	chr7:70275712-70722953	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70667000-70701400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:70671400-70688600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr7:70680400-70685000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:70682200-70685600	Weak transcription	Ovary	ovary
5	chr7:70683400-70686800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:70683800-70685200	Weak transcription	Pancreas	Pancrea
7	chr7:70684200-70692400	Weak transcription	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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