Variant report

Variant	rs7788579
Chromosome Location	chr7:128147625-128147626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1137306	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4371935	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4728114	0.89[AFR][1000 genomes]
rs4728118	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6467179	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831124	chr7:127970345-128147910	Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv1794896	chr7:128142170-128170380	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128117800-128162800	Weak transcription	Pancreas	Pancrea
2	chr7:128117800-128163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:128122000-128155400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:128122400-128156800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:128138000-128147800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr7:128141600-128150600	Weak transcription	Fetal Brain Female	brain
7	chr7:128141800-128152000	Weak transcription	K562	blood
8	chr7:128142000-128150200	Weak transcription	Primary T cells from cord blood	blood
9	chr7:128142000-128151400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr7:128142200-128148200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:128142200-128148400	Weak transcription	Spleen	Spleen
12	chr7:128142200-128149400	Weak transcription	Thymus	Thymus
13	chr7:128142200-128152600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:128142200-128163200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr7:128142400-128147800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:128142400-128152200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:128142600-128148000	Weak transcription	Fetal Intestine Large	intestine
18	chr7:128142600-128152000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:128142800-128152000	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr7:128143000-128149200	Weak transcription	Placenta	Placenta
21	chr7:128143000-128149200	Weak transcription	Left Ventricle	heart
22	chr7:128143000-128149600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr7:128143400-128151000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr7:128143600-128155400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:128143800-128149000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:128143800-128160000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr7:128144000-128152000	Weak transcription	Adipose Nuclei	Adipose
28	chr7:128144600-128148400	Weak transcription	Fetal Thymus	thymus
29	chr7:128144600-128150600	Weak transcription	Fetal Intestine Small	intestine
30	chr7:128145000-128151400	Weak transcription	Fetal Stomach	stomach
31	chr7:128145800-128148000	Enhancers	Primary B cells from peripheral blood	blood
32	chr7:128146000-128150200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr7:128146200-128151600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr7:128146400-128147800	Enhancers	Primary T killer memory cells from peripheral blood	blood
35	chr7:128146400-128148200	Enhancers	Primary B cells from cord blood	blood
36	chr7:128146400-128149000	Enhancers	Primary T cells fromperipheralblood	blood
37	chr7:128147000-128148000	Enhancers	Brain Angular Gyrus	brain
38	chr7:128147000-128148000	Enhancers	Brain Cingulate Gyrus	brain
39	chr7:128147000-128148600	Enhancers	Brain Hippocampus Middle	brain
40	chr7:128147600-128148600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr7:128147600-128148600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr7:128147600-128148800	Enhancers	GM12878-XiMat	blood

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