Variant report

Variant	rs7789167
Chromosome Location	chr7:50657696-50657697
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50651220..50655570-chr7:50655911..50660457,6	K562	blood:
2	chr7:50650775..50655570-chr7:50656344..50660954,5	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11575437	1.00[TSI][hapmap]
rs4265140	1.00[ASW][hapmap];0.85[AFR][1000 genomes]
rs4304294	0.85[AFR][1000 genomes]
rs4947693	0.90[AFR][1000 genomes]
rs4947701	0.90[AFR][1000 genomes]
rs6593020	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1015758	chr7:50565404-50768153	Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1023228	chr7:50573214-50777634	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1032882	chr7:50611138-50775257	Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538834	chr7:50611138-50775257	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1031138	chr7:50651793-50814881	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50650800-50659600	Weak transcription	Ovary	ovary
2	chr7:50652000-50671800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr7:50652200-50657800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:50652400-50687400	Weak transcription	Right Atrium	heart
5	chr7:50652600-50658600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr7:50652800-50658400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:50652800-50660400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:50653000-50658800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:50653000-50659800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:50653000-50660000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:50653200-50672400	Weak transcription	NHEK	skin
12	chr7:50653400-50659800	Weak transcription	Fetal Lung	lung
13	chr7:50653400-50670600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:50654000-50680000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr7:50654400-50660200	Weak transcription	Gastric	stomach
16	chr7:50654800-50659000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr7:50654800-50659200	Weak transcription	Hela-S3	cervix
18	chr7:50655200-50659000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr7:50655200-50660400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:50655800-50659600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr7:50655800-50659800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:50656000-50658000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:50656000-50658600	Weak transcription	Liver	Liver
24	chr7:50656000-50658600	Weak transcription	Fetal Intestine Small	intestine
25	chr7:50656000-50658800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr7:50656000-50659000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr7:50656200-50658200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr7:50656400-50658200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr7:50656400-50658200	Weak transcription	HSMMtube	muscle
30	chr7:50656400-50658800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr7:50656400-50659000	Weak transcription	Lung	lung
32	chr7:50656400-50659400	Weak transcription	Fetal Brain Female	brain
33	chr7:50656400-50660200	Weak transcription	HUVEC	blood vessel
34	chr7:50656600-50659200	Weak transcription	A549	lung
35	chr7:50656600-50659400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr7:50656800-50658600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr7:50656800-50659000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr7:50657000-50659000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr7:50657000-50659000	Weak transcription	Fetal Stomach	stomach
40	chr7:50657000-50659200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:50657000-50659200	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr7:50657000-50659600	Weak transcription	Pancreas	Pancrea
43	chr7:50657000-50662400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr7:50657200-50659000	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr7:50657200-50659200	Weak transcription	Brain Germinal Matrix	brain
46	chr7:50657200-50659200	Weak transcription	Brain Hippocampus Middle	brain
47	chr7:50657200-50659200	Weak transcription	Spleen	Spleen
48	chr7:50657200-50659400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr7:50657200-50659400	Weak transcription	Placenta	Placenta
50	chr7:50657200-50659600	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links