Variant report

Variant	rs7789885
Chromosome Location	chr7:78514140-78514141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1159145	0.95[TSI][hapmap]
rs12055933	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1411534	0.84[CHB][hapmap];0.88[JPT][hapmap]
rs16886376	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17151577	0.89[CHD][hapmap];1.00[JPT][hapmap]
rs17151635	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs4727761	0.82[CHD][hapmap];0.82[JPT][hapmap];0.85[YRI][hapmap]
rs4730559	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs514463	0.89[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs57854041	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs73137301	0.85[EUR][1000 genomes]
rs7794613	0.92[ASN][1000 genomes]
rs8180745	0.88[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464598	chr7:78492642-79483480	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv607659	chr7:78492642-79483480	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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