Variant report

Variant	rs7789913
Chromosome Location	chr7:50352695-50352696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50244968..50246588-chr7:50352625..50355039,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10269380	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11765436	0.83[ASN][1000 genomes]
rs17732497	0.91[CHB][hapmap]
rs1993444	0.88[ASN][1000 genomes]
rs4917017	0.91[CHB][hapmap]
rs6421315	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6583437	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6583438	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6583440	0.90[GIH][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes]
rs7777365	0.87[AMR][1000 genomes]
rs7781977	0.87[GIH][hapmap]
rs7782210	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7791218	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7795319	0.82[AMR][1000 genomes]
rs7797255	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802443	0.81[YRI][hapmap];0.87[AMR][1000 genomes]
rs7804185	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886239	0.95[CHB][hapmap];0.85[GIH][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464444	chr7:49671882-50454736	Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv606897	chr7:49671883-50454736	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv498090	chr7:49708644-50427714	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1020869	chr7:49712860-50457544	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1024102	chr7:50195864-50418159	Genic enhancers Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50346000-50353000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr7:50347200-50353600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr7:50347200-50353800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
4	chr7:50347400-50353800	Flanking Active TSS	Primary T cells from cord blood	blood
5	chr7:50347600-50353600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr7:50348400-50353000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:50348600-50354400	Weak transcription	Spleen	Spleen
8	chr7:50348800-50353000	Active TSS	Thymus	Thymus
9	chr7:50349200-50353600	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr7:50349200-50354200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr7:50349600-50354400	Weak transcription	Colonic Mucosa	Colon
12	chr7:50349600-50357600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:50350000-50353400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr7:50350200-50353600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr7:50350400-50352800	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr7:50351200-50353000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr7:50351600-50353600	Flanking Active TSS	GM12878-XiMat	blood
18	chr7:50351800-50352800	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr7:50351800-50352800	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
20	chr7:50351800-50353000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr7:50351800-50353000	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr7:50351800-50353200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:50352000-50352800	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr7:50352000-50353000	Weak transcription	Duodenum Mucosa	Duodenum
25	chr7:50352200-50352800	Enhancers	Primary B cells from peripheral blood	blood
26	chr7:50352200-50352800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr7:50352200-50353200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr7:50352200-50354200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:50352200-50358600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr7:50352400-50352800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:50352400-50353000	Active TSS	Primary T cells fromperipheralblood	blood
32	chr7:50352400-50353000	Enhancers	Primary hematopoietic stem cells	blood
33	chr7:50352400-50353000	Enhancers	Dnd41	blood
34	chr7:50352400-50353400	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr7:50352400-50353600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
36	chr7:50352400-50354400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr7:50352600-50352800	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr7:50352600-50352800	Active TSS	Fetal Thymus	thymus
39	chr7:50352600-50353000	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr7:50352600-50353600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
41	chr7:50352600-50353600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
42	chr7:50352600-50354200	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr7:50352600-50354200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:50352600-50354200	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr7:50352600-50354400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr7:50352600-50354400	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr7:50352600-50354800	Enhancers	K562	blood
48	chr7:50352600-50355200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr7:50352600-50356000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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