Variant report

Variant	rs77901468
Chromosome Location	chr1:223498252-223498253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv1000039	chr1:223429733-223527845	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1010798	chr1:223498145-223538989	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs77901468	SUSD4	cis	Heart Left Ventricle	GTEx

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223495200-223498400	Enhancers	Fetal Thymus	thymus
2	chr1:223495600-223498400	Enhancers	Primary T cells from cord blood	blood
3	chr1:223495600-223498400	Enhancers	Thymus	Thymus
4	chr1:223496000-223498600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:223496400-223498400	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr1:223497200-223504200	Weak transcription	Right Atrium	heart
7	chr1:223497200-223512600	Weak transcription	Pancreas	Pancrea
8	chr1:223497400-223510400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr1:223497600-223498400	Enhancers	Dnd41	blood
10	chr1:223497600-223504400	Weak transcription	Fetal Heart	heart
11	chr1:223498200-223504600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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