Variant report

Variant	rs7790724
Chromosome Location	chr7:140021292-140021293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139876082..139877986-chr7:140021120..140022625,2	MCF-7	breast:
2	chr7:140019180..140022735-chr7:140023014..140025983,5	K562	blood:
3	chr7:139875688..139878782-chr7:140020537..140027140,7	K562	blood:

Variant related genes	Relation type
ENSG00000260231	Chromatin interaction
ENSG00000006459	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10085561	0.82[ASN][1000 genomes]
rs10085565	0.81[ASN][1000 genomes]
rs10237808	0.87[ASN][1000 genomes]
rs12533908	0.98[ASN][1000 genomes]
rs28483540	0.98[ASN][1000 genomes]
rs4476922	0.82[AMR][1000 genomes]
rs4513893	0.80[AMR][1000 genomes]
rs4551259	0.98[ASN][1000 genomes]
rs55938265	0.98[ASN][1000 genomes]
rs58630294	0.97[ASN][1000 genomes]
rs60485346	0.97[ASN][1000 genomes]
rs6952512	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6952838	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6956771	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776930	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7800262	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140015600-140022000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:140016000-140022400	Weak transcription	Gastric	stomach
3	chr7:140016200-140025600	Weak transcription	Right Atrium	heart
4	chr7:140016200-140026000	Weak transcription	Fetal Kidney	kidney
5	chr7:140016200-140034000	Weak transcription	Pancreas	Pancrea
6	chr7:140016400-140025600	Weak transcription	Placenta	Placenta
7	chr7:140016400-140025800	Weak transcription	Ovary	ovary
8	chr7:140016800-140025600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:140016800-140025600	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:140016800-140025800	Weak transcription	Osteobl	bone
11	chr7:140016800-140034200	Weak transcription	Small Intestine	intestine
12	chr7:140017000-140022400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:140017000-140023800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr7:140017000-140024000	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:140017000-140025600	Weak transcription	Fetal Intestine Small	intestine
16	chr7:140017000-140025600	Weak transcription	Hela-S3	cervix
17	chr7:140017000-140025600	Weak transcription	HepG2	liver
18	chr7:140017000-140025800	Weak transcription	Adipose Nuclei	Adipose
19	chr7:140017000-140033200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:140017200-140032800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:140017400-140025800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr7:140017600-140022400	Weak transcription	Stomach Mucosa	stomach
23	chr7:140017600-140025800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr7:140017600-140033600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:140017600-140034000	Weak transcription	HMEC	breast
26	chr7:140018000-140025600	Weak transcription	Brain Hippocampus Middle	brain
27	chr7:140018200-140026000	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:140019400-140024800	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr7:140020000-140023400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr7:140020200-140025600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr7:140020400-140025600	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr7:140020600-140025600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr7:140021200-140022000	Enhancers	K562	blood

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