Variant report

Variant	rs7790741
Chromosome Location	chr7:33318944-33318945
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:33318880-33319030	Hela-S3	cervix:	n/a	n/a

Variant related genes	Relation type
ENSG00000224946	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10244288	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10246533	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1024805	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1894872	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2160255	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2216031	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2893467	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7793096	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830943	chr7:33167106-33352759	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv606610	chr7:33218763-33486316	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv916660	chr7:33272493-33506384	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1792546	chr7:33304218-33346932	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv887925	chr7:33304218-33361323	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33311200-33325200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:33313200-33328200	Weak transcription	Fetal Kidney	kidney
3	chr7:33315000-33319800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
4	chr7:33315000-33325000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:33315200-33324200	Weak transcription	HSMMtube	muscle
6	chr7:33316200-33319200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:33316400-33319000	ZNF genes & repeats	Aorta	Aorta
8	chr7:33316800-33319000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
9	chr7:33317000-33319600	ZNF genes & repeats	Fetal Muscle Leg	muscle
10	chr7:33317000-33347600	Weak transcription	Pancreas	Pancrea
11	chr7:33317400-33319200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr7:33317800-33319000	ZNF genes & repeats	Fetal Lung	lung
13	chr7:33317800-33319000	ZNF genes & repeats	Fetal Stomach	stomach
14	chr7:33318000-33319000	ZNF genes & repeats	Brain Anterior Caudate	brain
15	chr7:33318000-33319400	ZNF genes & repeats	Primary T cells from cord blood	blood
16	chr7:33318000-33319400	Weak transcription	Ovary	ovary
17	chr7:33318600-33319000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:33318600-33319000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
19	chr7:33318600-33319200	ZNF genes & repeats	Fetal Brain Male	brain
20	chr7:33318600-33339600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr7:33318800-33323400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr7:33318800-33324400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr7:33318800-33325000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr7:33318800-33326800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr7:33318800-33327400	Weak transcription	Left Ventricle	heart

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