Variant report

Variant	rs7790861
Chromosome Location	chr7:3007206-3007207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10085734	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10223941	0.83[AMR][1000 genomes]
rs10239139	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10248838	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10270253	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10277523	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4422691	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4513879	0.85[AMR][1000 genomes]
rs4549680	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58172300	1.00[AMR][1000 genomes]
rs6953177	0.85[AMR][1000 genomes]
rs6968463	0.85[AMR][1000 genomes]
rs6972349	0.85[AMR][1000 genomes]
rs6977052	0.85[AMR][1000 genomes]
rs73287239	1.00[AMR][1000 genomes]
rs7795713	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv1025727	chr7:2938301-3064008	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv1026476	chr7:2965034-3311344	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv538656	chr7:2965034-3311344	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv464260	chr7:2966138-3315572	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv605874	chr7:2966138-3315572	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv1018287	chr7:2967524-3298539	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv538657	chr7:2967524-3298539	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3005000-3008200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
2	chr7:3005200-3007600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
3	chr7:3005200-3008600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
4	chr7:3005400-3007600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:3005400-3008400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
6	chr7:3006200-3011200	Strong transcription	Primary B cells from cord blood	blood
7	chr7:3006200-3011200	Strong transcription	Primary T cells from cord blood	blood
8	chr7:3006200-3011800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr7:3006400-3007600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
10	chr7:3006400-3008400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr7:3006400-3008800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:3006400-3010000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr7:3006400-3011600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:3006600-3008000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr7:3006600-3008800	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr7:3006600-3013000	Weak transcription	Spleen	Spleen
17	chr7:3006800-3007600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr7:3006800-3011800	Weak transcription	Thymus	Thymus
19	chr7:3007200-3008000	Weak transcription	Primary B cells from peripheral blood	blood
20	chr7:3007200-3018000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr7:3007200-3018200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:3007200-3018200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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