Variant report

Variant	rs7791596
Chromosome Location	chr7:96797749-96797750
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10229665	0.91[AFR][1000 genomes]
rs1320433	0.87[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs2695802	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019725	chr7:96749866-96850819	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv539029	chr7:96749866-96850819	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96768800-96797800	Weak transcription	Left Ventricle	heart
2	chr7:96769000-96799600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr7:96769000-96811600	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr7:96771400-96818200	Weak transcription	A549	lung
5	chr7:96789400-96812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:96789400-96815400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr7:96789400-96818000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:96789600-96805200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr7:96789600-96818400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:96790400-96814600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr7:96790600-96811200	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr7:96790600-96811600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr7:96790600-96813600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:96790600-96813600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr7:96791000-96798000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr7:96791800-96811600	Weak transcription	Adipose Nuclei	Adipose
17	chr7:96796000-96811800	Weak transcription	K562	blood
18	chr7:96796400-96798000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr7:96796800-96797800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
20	chr7:96796800-96798000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr7:96797200-96797800	ZNF genes & repeats	Primary B cells from cord blood	blood
22	chr7:96797400-96798200	Weak transcription	Lung	lung
23	chr7:96797400-96801400	Weak transcription	NHEK	skin
24	chr7:96797400-96811200	Weak transcription	HepG2	liver
25	chr7:96797400-96814200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr7:96797400-96814800	Weak transcription	Pancreas	Pancrea
27	chr7:96797400-96816400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr7:96797400-96816600	Weak transcription	Aorta	Aorta
29	chr7:96797600-96798400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr7:96797600-96810800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr7:96797600-96811400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr7:96797600-96811800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr7:96797600-96818000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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