Variant report

Variant	rs7791750
Chromosome Location	chr7:65687421-65687422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11978432	1.00[TSI][hapmap]
rs17138152	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17138177	1.00[EUR][1000 genomes]
rs60128141	1.00[EUR][1000 genomes]
rs6460280	1.00[TSI][hapmap]
rs7790626	1.00[EUR][1000 genomes]
rs7806893	1.00[EUR][1000 genomes]
rs7809997	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761079	chr7:65092426-65689733	Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
3	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
4	nsv1028692	chr7:65673136-65751069	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538908	chr7:65673136-65751069	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65671600-65689000	Weak transcription	Pancreas	Pancrea
2	chr7:65672200-65723400	Weak transcription	Right Atrium	heart
3	chr7:65672600-65687600	Weak transcription	Brain Germinal Matrix	brain
4	chr7:65673000-65689000	Weak transcription	HMEC	breast
5	chr7:65673400-65689000	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:65674000-65688800	Weak transcription	Ovary	ovary
7	chr7:65676000-65689000	Weak transcription	Lung	lung
8	chr7:65676000-65696200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:65676000-65716800	Weak transcription	Primary B cells from cord blood	blood
10	chr7:65676200-65696200	Weak transcription	Fetal Stomach	stomach
11	chr7:65676600-65691200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:65676600-65693200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:65677000-65694600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr7:65677200-65693800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:65677800-65688800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:65679200-65687600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:65679200-65688600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:65684200-65687800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr7:65684200-65689000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:65684200-65690000	Enhancers	Liver	Liver
21	chr7:65685600-65689200	Weak transcription	Gastric	stomach
22	chr7:65685600-65696200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:65686200-65687800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:65686200-65688000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:65686600-65688000	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr7:65686600-65689000	Weak transcription	Adipose Nuclei	Adipose
27	chr7:65686800-65688800	Weak transcription	Fetal Lung	lung
28	chr7:65686800-65688800	Weak transcription	HepG2	liver
29	chr7:65686800-65701600	Weak transcription	Osteobl	bone
30	chr7:65686800-65715400	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr7:65687000-65687800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr7:65687000-65689800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:65687000-65689800	Enhancers	Stomach Mucosa	stomach
34	chr7:65687000-65701800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr7:65687000-65701800	Weak transcription	NHDF-Ad	bronchial
36	chr7:65687400-65687800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr7:65687400-65687800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr7:65687400-65687800	Enhancers	Monocytes-CD14+_RO01746	blood
39	chr7:65687400-65688000	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr7:65687400-65688000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr7:65687400-65688000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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