Variant report

Variant	rs7791837
Chromosome Location	chr7:2790559-2790560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:2788053..2792290-chr7:2793052..2798708,8	K562	blood:
2	chr7:2777523..2779993-chr7:2788582..2791308,2	MCF-7	breast:
3	chr7:2790103..2793093-chr7:2798943..2803164,4	K562	blood:
4	chr7:2788942..2791836-chr7:2793364..2795418,2	MCF-7	breast:
5	chr7:2790104..2792525-chr7:2796033..2798907,2	K562	blood:

Variant related genes	Relation type
ENSG00000146535	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs208354	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029250	chr7:2722737-2881021	Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv538652	chr7:2722737-2881021	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1024023	chr7:2726210-2829581	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv538653	chr7:2726210-2829581	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv1015700	chr7:2753965-2945848	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv966746	chr7:2781545-2797621	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
7	nsv1032282	chr7:2789555-2820774	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1022612	chr7:2789555-3019200	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:2752400-2796000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:2761000-2796200	Weak transcription	Hela-S3	cervix
3	chr7:2761000-2797000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:2771200-2796200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:2771400-2796200	Weak transcription	NHEK	skin
6	chr7:2773200-2796200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:2773200-2796400	Weak transcription	NH-A	brain
8	chr7:2773200-2797000	Weak transcription	Pancreas	Pancrea
9	chr7:2773600-2796400	Weak transcription	Osteobl	bone
10	chr7:2775200-2790600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:2775200-2791600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:2775200-2796200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:2775400-2797400	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr7:2775400-2801200	Weak transcription	Primary T cells from cord blood	blood
15	chr7:2775800-2796400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:2775800-2796400	Weak transcription	HSMM	muscle
17	chr7:2776200-2797000	Weak transcription	Spleen	Spleen
18	chr7:2776800-2793600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr7:2776800-2796200	Weak transcription	HepG2	liver
20	chr7:2777600-2796200	Weak transcription	Dnd41	blood
21	chr7:2778200-2796400	Weak transcription	Psoas Muscle	Psoas
22	chr7:2778600-2790800	Weak transcription	Adipose Nuclei	Adipose
23	chr7:2778600-2794800	Weak transcription	Primary B cells from cord blood	blood
24	chr7:2778600-2796200	Weak transcription	Fetal Lung	lung
25	chr7:2778600-2796400	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:2778800-2795800	Weak transcription	Placenta	Placenta
27	chr7:2778800-2796200	Weak transcription	NHLF	lung
28	chr7:2779000-2796600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr7:2779600-2796000	Weak transcription	Fetal Intestine Small	intestine
30	chr7:2780200-2796200	Weak transcription	Fetal Stomach	stomach
31	chr7:2782800-2797000	Weak transcription	Right Ventricle	heart
32	chr7:2782800-2797200	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr7:2783000-2795600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr7:2783000-2798000	Weak transcription	Lung	lung
35	chr7:2783600-2796800	Weak transcription	Fetal Intestine Large	intestine
36	chr7:2783800-2790600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:2783800-2797200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr7:2787400-2796200	Weak transcription	HSMMtube	muscle
39	chr7:2788400-2797400	Weak transcription	Thymus	Thymus
40	chr7:2789000-2790600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr7:2789200-2831600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr7:2789400-2790600	Enhancers	Fetal Heart	heart
43	chr7:2789600-2790800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr7:2789600-2791200	Enhancers	Colon Smooth Muscle	Colon
45	chr7:2789800-2790800	Enhancers	H1 Cell Line	embryonic stem cell
46	chr7:2789800-2791000	Enhancers	Gastric	stomach
47	chr7:2789800-2791000	Enhancers	Left Ventricle	heart
48	chr7:2789800-2791000	Enhancers	Ovary	ovary
49	chr7:2789800-2792200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr7:2790000-2790600	Enhancers	HUES6 Cell Line	embryonic stem cell

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