Variant report

Variant	rs7792080
Chromosome Location	chr7:122330186-122330187
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1860858	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs1860860	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2058444	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2192019	1.00[YRI][hapmap]
rs2215666	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2215667	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs2471177	1.00[AMR][1000 genomes]
rs2471179	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3993668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6466835	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6466837	1.00[YRI][hapmap]
rs6944692	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6972849	1.00[YRI][hapmap]
rs6978244	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs763877	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7788040	1.00[YRI][hapmap];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017029	chr7:121958574-122338623	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv532178	chr7:122203056-122978846	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv532179	chr7:122249639-122986259	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv532181	chr7:122291571-122684719	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv817238	chr7:122325864-122371594	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:122324000-122331600	Weak transcription	Lung	lung
2	chr7:122324000-122336000	Weak transcription	Right Atrium	heart
3	chr7:122324200-122336000	Weak transcription	Fetal Lung	lung
4	chr7:122327600-122332200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:122327600-122332600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:122327600-122336000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:122327800-122332200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr7:122328400-122330200	Enhancers	Left Ventricle	heart
9	chr7:122328400-122330400	Enhancers	HepG2	liver
10	chr7:122329000-122333200	Weak transcription	Right Ventricle	heart
11	chr7:122329200-122330800	Enhancers	Gastric	stomach
12	chr7:122329400-122331600	Weak transcription	Fetal Muscle Leg	muscle
13	chr7:122329400-122332400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:122329600-122330200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr7:122329600-122330200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:122329600-122330200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr7:122329600-122330400	ZNF genes & repeats	Fetal Intestine Small	intestine
18	chr7:122329600-122343400	Weak transcription	Ovary	ovary
19	chr7:122329800-122330200	Genic enhancers	Pancreas	Pancrea
20	chr7:122330000-122343000	Weak transcription	Spleen	Spleen
21	chr7:122330000-122347000	Weak transcription	Duodenum Mucosa	Duodenum

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