Variant report

Variant	rs77920955
Chromosome Location	chr18:11893856-11893857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr18:11893727-11894279	HL-60	blood:	n/a	n/a
2	POLR2A	chr18:11893084-11894145	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11893379..11895181-chr18:11897830..11899387,2	K562	blood:
2	chr18:11892388..11894879-chr18:11897284..11900106,3	K562	blood:

Variant related genes	Relation type
MPPE1	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833590	chr18:11757329-11924539	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1055453	chr18:11776790-12110135	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
4	nsv543654	chr18:11776790-12110135	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
5	nsv1059775	chr18:11892845-11911143	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11873200-11902000	Weak transcription	Fetal Heart	heart
2	chr18:11876800-11902600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:11877000-11902400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr18:11878200-11895000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr18:11878200-11902400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:11880000-11907600	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr18:11881600-11898400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr18:11881800-11906200	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr18:11882400-11907000	Weak transcription	Small Intestine	intestine
10	chr18:11882800-11895600	Weak transcription	NHDF-Ad	bronchial
11	chr18:11883400-11897000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr18:11883600-11896800	Strong transcription	Fetal Intestine Small	intestine
13	chr18:11883600-11907000	Weak transcription	NH-A	brain
14	chr18:11883800-11894200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr18:11883800-11898400	Strong transcription	Fetal Stomach	stomach
16	chr18:11884000-11894200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr18:11884000-11897000	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr18:11884000-11897200	Strong transcription	Fetal Muscle Trunk	muscle
19	chr18:11884000-11898200	Strong transcription	Fetal Muscle Leg	muscle
20	chr18:11884000-11898800	Strong transcription	Thymus	Thymus
21	chr18:11884000-11899800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr18:11884000-11906200	Strong transcription	Fetal Thymus	thymus
23	chr18:11884200-11897000	Strong transcription	Dnd41	blood
24	chr18:11884600-11894000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr18:11885000-11894200	Strong transcription	Spleen	Spleen
26	chr18:11885000-11905400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr18:11885400-11907000	Weak transcription	HMEC	breast
28	chr18:11885600-11905800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr18:11885600-11907400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr18:11885800-11895000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr18:11886600-11903200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr18:11886600-11906200	Weak transcription	Fetal Kidney	kidney
33	chr18:11886800-11902200	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr18:11886800-11902400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr18:11887000-11895000	Weak transcription	Fetal Brain Female	brain
36	chr18:11887000-11895600	Weak transcription	NHLF	lung
37	chr18:11887000-11902200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr18:11887200-11902600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr18:11887200-11902800	Weak transcription	HSMMtube	muscle
40	chr18:11888000-11905600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr18:11888000-11907200	Weak transcription	HSMM	muscle
42	chr18:11888200-11895000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr18:11888200-11907200	Weak transcription	Stomach Mucosa	stomach
44	chr18:11888400-11901800	Weak transcription	Gastric	stomach
45	chr18:11888600-11898800	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr18:11888600-11902600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr18:11888600-11905400	Weak transcription	A549	lung
48	chr18:11888800-11902400	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr18:11889400-11905800	Weak transcription	HepG2	liver
50	chr18:11889400-11907000	Weak transcription	NHEK	skin

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