Variant report

Variant	rs7792183
Chromosome Location	chr7:19144306-19144307
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10252740	1.00[AMR][1000 genomes]
rs10255265	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10266061	1.00[AMR][1000 genomes]
rs10273207	1.00[AMR][1000 genomes]
rs10273251	1.00[AMR][1000 genomes]
rs10276514	1.00[AMR][1000 genomes]
rs10279824	1.00[AMR][1000 genomes]
rs28483227	1.00[AMR][1000 genomes]
rs60334104	1.00[AMR][1000 genomes]
rs73684661	1.00[AMR][1000 genomes]
rs7795891	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531020	chr7:18971153-19261019	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv532096	chr7:19094324-19361216	Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532097	chr7:19105767-19302951	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19119200-19146000	Weak transcription	HSMM	muscle
2	chr7:19140400-19144800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:19141000-19146000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:19141000-19146200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:19141400-19145400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:19142800-19145600	Weak transcription	Placenta	Placenta
7	chr7:19143200-19145400	Weak transcription	Adipose Nuclei	Adipose
8	chr7:19143200-19149000	Active TSS	NHDF-Ad	bronchial
9	chr7:19144200-19144400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
10	chr7:19144200-19144600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:19144200-19144600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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