Variant report

Variant	rs7792996
Chromosome Location	chr7:107790841-107790842
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107783683..107786495-chr7:107790185..107791796,2	K562	blood:
2	chr7:107789647..107791152-chr7:107794185..107796179,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10487841	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs12111776	0.96[YRI][hapmap];0.92[AFR][1000 genomes]
rs12111953	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs17134752	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17134758	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs17155074	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs17155081	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs17155397	0.82[CEU][hapmap]
rs17155405	0.82[CEU][hapmap]
rs17155446	0.82[CEU][hapmap]
rs17329871	0.82[CEU][hapmap]
rs17330779	0.82[CEU][hapmap]
rs17388677	1.00[CEU][hapmap]
rs17388872	0.82[CEU][hapmap]
rs2193243	0.82[CEU][hapmap]
rs367668	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs58496724	0.92[AFR][1000 genomes]
rs58537052	0.81[AFR][1000 genomes]
rs60995779	0.81[AFR][1000 genomes]
rs62469166	0.81[AFR][1000 genomes]
rs62469167	1.00[EUR][1000 genomes]
rs62469168	1.00[EUR][1000 genomes]
rs62469172	0.92[AFR][1000 genomes]
rs62469173	1.00[EUR][1000 genomes]
rs62469175	0.92[AFR][1000 genomes]
rs6466219	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs6973148	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6974903	0.92[AFR][1000 genomes]
rs73412325	0.91[AFR][1000 genomes]
rs73412389	0.92[AFR][1000 genomes]
rs7811595	0.82[CEU][hapmap]
rs7812138	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv831089	chr7:107687618-107877240	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
5	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107783000-107792600	Weak transcription	Pancreas	Pancrea
2	chr7:107786800-107798000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:107786800-107805600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:107786800-107811800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr7:107786800-107818400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:107786800-107819000	Weak transcription	Brain Angular Gyrus	brain
7	chr7:107786800-107857800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:107787000-107793000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:107787000-107818800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:107787600-107799600	Weak transcription	Placenta	Placenta
11	chr7:107787600-107799800	Weak transcription	Fetal Brain Female	brain
12	chr7:107787600-107818800	Weak transcription	Brain Anterior Caudate	brain
13	chr7:107787800-107800400	Weak transcription	Fetal Muscle Leg	muscle
14	chr7:107787800-107807800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr7:107787800-107844200	Weak transcription	Brain Germinal Matrix	brain
16	chr7:107788000-107791600	Weak transcription	Liver	Liver
17	chr7:107788000-107798400	Weak transcription	Fetal Intestine Large	intestine
18	chr7:107788800-107796000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:107789200-107791000	Strong transcription	HUVEC	blood vessel
20	chr7:107789600-107791000	Enhancers	Fetal Lung	lung
21	chr7:107790400-107816800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:107790600-107791200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:107790600-107796600	Weak transcription	A549	lung
24	chr7:107790800-107792400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr7:107790800-107798000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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