Variant report

Variant	rs77930044
Chromosome Location	chr6:36661250-36661251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36659288..36661808-chr6:36668728..36671591,2	MCF-7	breast:
2	chr6:36659558..36662002-chr6:36724611..36726643,2	MCF-7	breast:
3	chr6:36658024..36659928-chr6:36660591..36663281,3	MCF-7	breast:
4	chr6:36659068..36661515-chr6:36679186..36681005,2	MCF-7	breast:
5	chr6:36560786..36563528-chr6:36659372..36662028,2	K562	blood:

Variant related genes	Relation type
ENSG00000124772	Chromatin interaction
ENSG00000112081	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36655000-36672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:36655200-36669400	Weak transcription	Gastric	stomach
3	chr6:36655600-36663400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:36656200-36665200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:36657400-36663600	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:36658800-36661400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr6:36658800-36663200	Enhancers	Fetal Heart	heart
8	chr6:36659200-36661400	Enhancers	Spleen	Spleen
9	chr6:36659400-36661400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:36659400-36661400	Enhancers	Esophagus	oesophagus
11	chr6:36659600-36661400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:36659600-36661400	Enhancers	Right Atrium	heart
13	chr6:36659600-36661400	Enhancers	Right Ventricle	heart
14	chr6:36659600-36661600	Enhancers	Left Ventricle	heart
15	chr6:36659800-36665800	Weak transcription	Fetal Intestine Small	intestine
16	chr6:36660200-36661400	Enhancers	Fetal Muscle Leg	muscle
17	chr6:36660400-36661400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:36660600-36666400	Enhancers	Primary B cells from cord blood	blood
19	chr6:36660800-36665200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:36660800-36665200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:36660800-36665200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:36660800-36666800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:36661000-36661400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
24	chr6:36661000-36661600	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr6:36661000-36662400	Weak transcription	GM12878-XiMat	blood
26	chr6:36661000-36665200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:36661000-36667000	Weak transcription	Duodenum Mucosa	Duodenum
28	chr6:36661200-36661400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:36661200-36661400	Enhancers	Aorta	Aorta
30	chr6:36661200-36664000	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr6:36661200-36664000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:36661200-36664600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:36661200-36666000	Weak transcription	Stomach Mucosa	stomach
34	chr6:36661200-36668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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