Variant report

Variant	rs7793560
Chromosome Location	chr7:12887768-12887769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10229134	0.91[ASN][1000 genomes]
rs10230511	0.87[CHB][hapmap]
rs10238211	0.91[ASN][1000 genomes]
rs10240689	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10243288	0.91[ASN][1000 genomes]
rs10243324	0.95[ASN][1000 genomes]
rs10246359	0.93[ASN][1000 genomes]
rs10254295	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10256191	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10259240	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10259524	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10269634	0.91[ASN][1000 genomes]
rs10278442	0.93[ASN][1000 genomes]
rs12669053	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1476815	0.90[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17166415	0.81[EUR][1000 genomes]
rs17619332	0.91[ASN][1000 genomes]
rs17619626	0.82[EUR][1000 genomes]
rs17681457	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1978246	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1990346	0.91[ASN][1000 genomes]
rs2108474	0.81[CHD][hapmap]
rs2109290	0.93[ASN][1000 genomes]
rs2191265	0.86[CHB][hapmap];0.91[CHD][hapmap];0.82[GIH][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs2191266	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2191267	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2215333	0.93[ASN][1000 genomes]
rs2215337	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2356698	0.87[EUR][1000 genomes]
rs2357046	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2357049	0.91[ASN][1000 genomes]
rs2357052	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs28433921	0.90[ASN][1000 genomes]
rs28610292	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2884084	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28873158	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35490471	0.92[ASN][1000 genomes]
rs4260793	0.88[ASN][1000 genomes]
rs4288267	0.91[ASN][1000 genomes]
rs4288268	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4719339	0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4721148	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4721153	0.81[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs55991971	0.87[EUR][1000 genomes]
rs62448164	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6460980	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6460985	0.83[ASN][1000 genomes]
rs66817397	0.84[EUR][1000 genomes]
rs6944255	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6947361	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6948576	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6948718	0.93[ASN][1000 genomes]
rs6949476	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6950280	0.95[ASN][1000 genomes]
rs6950340	0.91[CHB][hapmap];0.93[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs6953097	0.92[ASN][1000 genomes]
rs6961897	0.95[ASN][1000 genomes]
rs6962633	0.93[ASN][1000 genomes]
rs6965712	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6969461	0.93[ASN][1000 genomes]
rs6976082	0.93[ASN][1000 genomes]
rs6978013	1.00[CEU][hapmap]
rs758675	0.82[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs758676	1.00[CEU][hapmap]
rs7783477	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7787464	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7787728	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7790527	0.95[ASN][1000 genomes]
rs7791902	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7795573	1.00[CEU][hapmap]
rs7800218	0.91[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs7800522	0.83[ASN][1000 genomes]
rs7800580	0.91[ASN][1000 genomes]
rs7803338	0.91[ASN][1000 genomes]
rs7808814	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7809081	0.91[ASN][1000 genomes]
rs7810511	0.89[ASN][1000 genomes]
rs7811356	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024554	chr7:12214722-12967418	Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv538735	chr7:12214722-12967418	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv932020	chr7:12676890-13239551	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv868830	chr7:12712753-13517417	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv1027501	chr7:12743592-12927109	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv606235	chr7:12781381-13205950	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1020568	chr7:12802640-13183737	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:12886800-12888400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:12887000-12890200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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