Variant report

Variant	rs7793814
Chromosome Location	chr7:83649231-83649232
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10499878	0.80[AFR][1000 genomes]
rs11974894	0.90[CEU][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11975312	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11976049	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11978232	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1357814	0.90[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1404473	0.90[CEU][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1534074	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2372019	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2372022	0.90[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35010413	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35055790	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4732533	0.89[CEU][hapmap]
rs6949547	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6978663	0.90[CEU][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020784	chr7:83577402-83687108	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv888623	chr7:83596683-83687622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv888624	chr7:83596683-83698177	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv888625	chr7:83616528-83687622	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3352967	chr7:83626144-83684599	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83589000-83654600	Weak transcription	Fetal Stomach	stomach
2	chr7:83591200-83654600	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:83606000-83654000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:83609800-83650400	Weak transcription	NHLF	lung
5	chr7:83610200-83673000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:83624400-83651600	Weak transcription	Fetal Intestine Small	intestine
7	chr7:83626000-83650600	Weak transcription	NH-A	brain
8	chr7:83634800-83652000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr7:83634800-83654600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:83635000-83654400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:83635200-83651400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr7:83635400-83650800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr7:83636200-83654800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr7:83638600-83652000	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:83639200-83650600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr7:83641000-83650600	Weak transcription	NHDF-Ad	bronchial
17	chr7:83642000-83651600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:83642400-83652000	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr7:83643600-83649600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:83643600-83650800	Weak transcription	A549	lung
21	chr7:83643600-83652000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:83647200-83652000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:83647200-83654800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:83647400-83652000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr7:83647600-83651800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:83647800-83649400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:83648200-83649400	Enhancers	Fetal Heart	heart
28	chr7:83648400-83654400	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr7:83648600-83650800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:83648600-83654000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr7:83649200-83650400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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