Variant report

Variant	rs7793945
Chromosome Location	chr7:26374032-26374033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:26372399..26374092-chr7:26382837..26384720,2	MCF-7	breast:
2	chr7:26366431..26368895-chr7:26373379..26376096,2	K562	blood:
3	chr7:26364731..26367327-chr7:26371858..26374794,2	K562	blood:
4	chr7:26369795..26371338-chr7:26373306..26375843,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs4563785	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1018971	chr7:26161228-26380361	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv2761313	chr7:26340970-26389772	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7793945	SNX10	cis	multi-tissue	Pritchard

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26335200-26386400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:26345600-26386200	Weak transcription	Thymus	Thymus
3	chr7:26345800-26375600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr7:26361800-26385400	Weak transcription	Pancreas	Pancrea
5	chr7:26367600-26378800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr7:26368600-26374600	Enhancers	Primary B cells from peripheral blood	blood
7	chr7:26368600-26377600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:26368800-26374400	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr7:26368800-26405000	Weak transcription	Placenta	Placenta
10	chr7:26369400-26379600	Weak transcription	HepG2	liver
11	chr7:26370400-26385000	Weak transcription	Spleen	Spleen
12	chr7:26370600-26377400	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr7:26371200-26374400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr7:26372400-26376200	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr7:26372400-26405200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr7:26372600-26374400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr7:26373200-26376400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:26373400-26374800	Enhancers	Primary T cells from cord blood	blood
19	chr7:26373400-26376200	Enhancers	Primary hematopoietic stem cells	blood
20	chr7:26373600-26374400	Enhancers	GM12878-XiMat	blood
21	chr7:26373600-26374600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr7:26373800-26374400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr7:26374000-26374200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr7:26374000-26374200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr7:26374000-26374200	Enhancers	Liver	Liver
26	chr7:26374000-26374800	Flanking Active TSS	Primary B cells from cord blood	blood
27	chr7:26374000-26374800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr7:26374000-26374800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
29	chr7:26374000-26374800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr7:26374000-26375200	Enhancers	Fetal Thymus	thymus

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