Variant report

Variant	rs779452
Chromosome Location	chr6:69964296-69964297
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1619465	0.92[CEU][hapmap];1.00[GIH][hapmap];0.95[TSI][hapmap]
rs314215	0.83[GIH][hapmap]
rs3799047	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs7752099	1.00[ASW][hapmap];0.92[CEU][hapmap];0.90[CHD][hapmap];0.82[LWK][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs779458	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs779465	0.94[EUR][1000 genomes]
rs779469	0.94[EUR][1000 genomes]
rs779476	0.91[EUR][1000 genomes]
rs779479	0.93[EUR][1000 genomes]
rs779480	0.83[GIH][hapmap]
rs779482	0.83[GIH][hapmap]
rs779485	0.85[EUR][1000 genomes]
rs779486	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs9294824	0.88[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes]
rs9454725	0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv966625	chr6:69958100-69964349	Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69948600-69970200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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